RNA id: AMCG00020657


Basic Information

Item Value
RNA id AMCG00020657
length 5812
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00020657
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28161602 ~ 28239074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cactgcTACAtagatttattaattaatacaaagtacaaataaaacaccttttcGAAGACACGCTAACTATTATGTAGCTATTCAATGATTTTGTGTTACTTATTTGGTCAGAAAATCGTTGGAACAAGCAGTACTTTTCAAAGAACAGAAAACTAATGAAATACTCTAAATGACTTATGGTACATTATGAAGTTTTCAGGAATTTCAGAAAAAGCCTTGAAATAAAAGTTTCCAAATGTGTCCTTTTCCACTGAATCAGTTGTACTTAATctcaagatgtttttttccccctaagtCTACACACAgatttcaggaaaacaaaatattctgGCTTCTAACATGTCCTgatttgcctttttaaaaagacTGAAATATGTTACCCCTTTTATGTTCTTTAATTTGTATCAACATTGTACAGAGTACCGCTTGGAGTAATGATCAAAGCCGTAGCACAGAGTATGGATTACCTGCTGCTGCAGTTAAGATAATTCgaggtttttaattaattatgcttaagaaataattaattactctAGTCCTAGTGATGTGTCAGattgcacaaaaaacaaatcatggtagattttgtttttaaaaaactttaaaactcgttgtttatatttaacactacagtattttagtatttttaggattttttttggTTATGCAGTGCAATTATATTTGGCTGTATTCTGCAAAACTAGTTTAAtgtttactaaaaataaatgatcaattgTCAAACATATCATAAACAATACCTTTCTGCTATGACAATTTCTTCCTGTCTTGAGCACAGTAGCATTTCAATTTCTAAAGACCATTATTTCCACATTACAGACTGGCTTCACAATCCATTTACCGACCAGTTGTTTGGTTTCACAAAGCAGATTAGCTGCTTTTGGAAATCTAATAACAAGGAAACACTCTTTTAAGACATTAAGCTGCTGTTTCAGACACAGTGCTACGATCATGAGAAGACTGTACCACCAAAAAAGGGTTTTTATAATGCTTAAATTAGAGTTTAGAAGTGTTCCTGAGAAATATGTCTTCCCTTGCTTTCTTCAGCTGTTTATGTAACCTAaccttcatgttttatttttaattccaacGTTTGAGATATAGGTAGAATCTGAACACTTTAAATATGATAACtcgcacatacatacatacgtttGTGCAAAGGTGGACCCGATAAGAGAGGGCTGCTCGAGAACAGtgaactacaggcactttttcAGAACTGAACAATTTGCtttcagatttaaaacattaatgtattatttccttgatctAATATAAGGGCAATGAGAATACAAACTTTCTCCCGAGGATGCAAGGATCTTGAAACTGTAATTTATAAAGAAatgagtttttaattaaaaaaataatacaattcttcGCTGGTTAATGTGGTTACGTGCCCACAACTGGAAGAAACGAGAAGATCACAGCAACAAATGCAATTACGAGCAGAATATCCTGCAGCAGATGCTTAAATGAGGAAGATTTAGGCTTCCTCCCATGGCCcctttttttaaaccactgaaCTACTTCATCCAAGCTGTACTTTTGGGGTTCATAGCCCAGGTTTCTCTTTGCCTTGGCCATGCTGAAGTAATGTGTGACCCCTGTCTTGTAGACCTCTGTGCGAGTAAGCAGAGGCTGGAAGTTATAGAGGCGGCCAACAAGGGAATGAACCATTTCGGTGAGGAAGGCGAAGAGGTAGATGAGGGTGAGGGGCAGGCGCACTTTGGGGAAAGGGTGGCCCAAGCCTTCCACCAGAGGGCGGAAAAACTCAAAGTTGTTGATGGGTTGTCCATCGGAGATAAAGTAGGCTTGGCCGGATGCTCGGTACCCTTTGTTCGCAGTCAGGGCCTCAGCAGCCAGCACGTGCGCTGCAGCCAGGTTGTCCACGTGGACGAACTCCACCAGGCTGCTGGCTTCTCCATACACGAAGCAGAAGAGGCCCCTTTCGATGTACCCGACAATCCTTGGAAGGTGCCTCTGCTCGCCGGGTCCGTAGATGCCTGCCGGACGCAGGGCCGAGGTTCTCAGAACGCCCACGCCGTTTTCCAAGGCTGTACCGTTGGCCTCCATCACGGCCATCTCAGCCAGGGCCTTGGTCTTGGAGTAGTGATCAGGGTGGAGGTGGAGCGGCAAGTAGGGAAGAGTCTCGTCTCCGTTTTCAATTACTTGGCCACCGAAGACCACGTTGAAGGTGCTGGTGTAGATGAGCCGGGGCACTGCGCTGGCCACACAGGCCCGGATCACGTGCTCTGTCCCGCGCACGTTCACCTCTTCGATCAGGGTCTGGTTCAGCTGCTCTCGGCCTGACATGCCGTATGAAGCGATGTGGAAGACGCAGTCGATTCCTCGTGTTGCACTCTCCACCTCGGCGTATTCCCTGATATCTCCGTGCACGAACACCATCCCTTCTGGAATTTCCTGGCTAGGTGGACGGACGTCAAAGAGCACAACCTTGGCCCCCTTCTCATGCAGAGCACATGCAAGGCGGTAGCCAAAATAGCCTCCGCCGCCAGTAATGAGGAAAGTATCTTTCAATTCCTTACGGTCTACTTGATCCATATCTCTCTCGTTAGGTGTTAAAGGAATCGCTTCCTGTATGCAGGAGGAGCTTCCCCGGTCTTCTGCTTGCCTTCTTGCTGCGCAAATTTACGCAGTTGTTCGCacatctgcgctgctccaccaatgggatcggtggaattctgcaacactgcggaaatctgcgctgcaCGTACATAAACCAGGCGGCGCTGCACGGCTGTGCGCACTCTGAGTGACGTCCTACGTTTTACGCTTTCATTTGCACAACAGAGATGGCGGGGAAACTCAAAGCTGAAGAAATGAAAGATATAATACAGCGGTTAAATACTATCAACCATTCCTTAGAGTCCGCTGTGGCATCACTGGCGCAGAGCAAGAAGGAGCTGGGAAAGGCAGCCGAGAGCCAGACATACCTCAATCAGAATTCAGTTACCACTTGGCACATGCTGAAGACGTACTAAACAGGGTGGTAAAAAAACACCTGTACacctgtagaaaaaaaataatctcagGTCGAAggaaattcaaaaacaaaaccaaaaacaacctCACCCGTGGTTCTGAAAGAATGGAGAGCCCTCTCGACGAATCTTTGTATTTCCCTGCGCTTTATGCCACAGTCACAGCACTGTACATAGGGGCAGTGATACTCCGAGTAAAAGGGGGACTGAAGTTTGGGTCTTGGTATTTTATTGTGACTTTGGTGCTGACTGTTCTGGGTGGGCCCCTGTGCTTTCTGAGTTTGCCGGGCTACACTGGACTACTCCTGCTCACCTTCAGCTTTTTCGTCTGCTCTTTGCTACTTGGAAAACCAGTAGAACTGCTGCCAGTGAACAACAGAGCCGTGCTGATTACCGGCTGTGATTCAGGGTTCGGTCACGCCTTGGTCCAGCACTTGGACAGCCTGGGTTTCACTGTGTTTGCCGGAGTGCTGAACGAGAGAGGCGTCGGTGCGGACAAGCTGAGGAGATGCGGCTCAGAGAGGCTCTCGGTACTTCAGCTGGATGTAACCGACAGTGCTCAGATCCAGACGGCTTACCTGCGAGTGAATGCTGATGTTGGGGAAACGGGGCTTTGGGGGATAGTAAATAATGCAGGATTCCTGGGATGTGTAGCAGATGGAGAGATCCTGCCCATGAAGCTGTACAGGAAGTGCATGGCAGTCAACTTCCTTGGGGCAGTGGAGCTGACACAAACATTCCTGCCTCTCATTCGCAGAGCCAGAGGCAGGATGGTCAATATTTCTAGTTTTGCAGGAGAAGTCCCCATCCCTGGGTTTGCAGCCTATGGGGCTTCCAAAGCAGCCCTCAGCATGTTTTCCGAAGCCATGAGGCAGGAGCTGTCCAGATGGGGCATCAAAGTAGCTATCGTCCAGCCATCGGGTTTCAAAACAAATATCCGTGGCCAGAAAAAAGAATGGGAGAGCTGTAAGGAAGAGATCTTATCTCAGCTTCCACAAGATGTGAAGGAGGACTATGGCGAGGGATACATCTCCTCCATCCTCGgccatttcttccaaattatGTCCGTCTCCCAGGAGGACCTGCGGCCAGTGATGGACGACATTTATCAAGCCCTGATGGCTGCCAGCCCACAGACCCTCTATACGCCTGGCCAGTTGGCCTGGATCATCCCATTTATGCACCGCTTCTTCCCCGTACGTTTCAGTGACTTTGTGATTGCCACCCTATTTGGCTTCTACAAGCATGTCCCAGCGAGGCTGCAGGGGACTTCCAGTCCAGTCAACAAGCGTACAGGATAACATGTGCAGCTAGGTATTGTATTTCTGCCCTTAAGGTTTCTTAAAACTGTCACACTACGACCTGAGGCTTCTTAACTAACCAGTCTCACTCCACATTCCCCAATGCAGTGTATTCTGGAAGCATTTTTAGAGTGTATGCATCTCCCATAACATCTCATAGGGCTGTATTTGGTTCCATACACTATATGGAGAATATCATATTGATTTATGTGCGGCAGATATCTTGTGGCAGCCGAGTTTGTTCCCTTTTATGGTGAGTTTGCACTTATTCCACAGTAGGTGGACAATTTTTACGGTTCCATCTGCATTTCTGTCTTCCAGACTCGAACCTACTACTCTTGATGCCTTATCTCTGTTAGAGTTTTTAACATACACCTACACAAGTGCCGTTCTGTCTTTGCCACAGcgttgctttattgtttttatctgcGTGAAGGCAGCAGGATGTGAAATGAAGTGACAGATGCTTTATCTACCCGAGAAGAAACCATGACCCTATGCTTGTGTAACAGTGATCTAGGCTTCATCTCCTGCAGgtagattattattgttattattatgttattttttaatcatgccaagtttccctttttttcttattttgaagcATGTATGAATCATTAGAGTTACACAGACCTTTCCAGCTGTCTCCTATCTGCAAGTAATGTATGTTTGTGCAATATTGTCTTccttttttctaaaataaataaatgtttgtatcAAATCATTTGAATGTAATTCTATTCAGCTTTACTGTATTTGACTGTGACACTTGACTGGGTTGACCTTGATTATAAAGAGGATTAAATGGCTTTTACTGTCCACTGTAGAGATAGGACAGAAGATTTAATTGAGGACTACTTCAAGTATGAGCCCTTTTCTCTTAACTAAGACAGTATTTCGGTGGGGTTCTACTCCTCAATTAGCTTTGCCACCTGTTGCTACCCCGGCACTACAGCCCAGAGCATCTAATTTGTGTCAATGTAATGACAAAAGCCATGCCTTGACTCACTTCAGAGATCCTGTGAGATTGTGAGACTGCAGACAACACAGCCACTGTGTGCTATAGTACTGGAGAATAGAAACATAGAAGTTGTCTATGAGCAGTACAATAAAAAGCAGATGTTTCCAGTAACCCTGACACATAATAAAAATACGACTTTACAACTGTTTGTTGATCAGACTATCCTTCATGCATGCATCCTTGATGCATCTAATTCACTGATAGTTTGAGTGTAATTATCATATGATTAAATTACCCAGCCATACATAAAATAGGCCCAGAATTATCTGCTTGTTACAAAgatgtaaaaaactaaacaaattagcCTTTTGTTCTTGACTGATTACAGGACACAAAGCAACATTCAAGGTCAGGGAAGAACAATTGCTCAAGCATGGCAGAAATGTATTGTTACTAAGTTAAGAAGTCATGATGGGATAATAATAACCAATGTGCAAGCTCTATTAATTTGGGGAGTCCCAAAG

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80977 lncRNA downstream 758075 27420366 ~ 27420646 (-) True G64745
TU80932 lncRNA downstream 942399 27236083 ~ 27236322 (-) True G64708
TU80850 lncRNA downstream 1432898 26745549 ~ 26745823 (-) True G64632
TU80848 lncRNA downstream 1446433 26731435 ~ 26732288 (-) True G64630
TU80847 lncRNA downstream 1448610 26729855 ~ 26730111 (-) True G64629
TU81115 lncRNA upstream 125035 28316769 ~ 28323164 (-) True G64847
TU81159 lncRNA upstream 666255 28857989 ~ 28858354 (-) True G64886
TU81188 lncRNA upstream 804658 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA upstream 804658 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA upstream 804683 28996417 ~ 28999532 (-) False G64912
AMCG00020658 mRNA downstream 30874 28137230 ~ 28147847 (-) True AMCG00020658
AMCG00020653 mRNA downstream 143312 27863475 ~ 28035409 (-) True AMCG00020653
AMCG00020652 mRNA downstream 321103 27795256 ~ 27857618 (-) True AMCG00020652
AMCG00020651 mRNA downstream 392696 27752194 ~ 27786025 (-) True AMCG00020651
AMCG00020650 mRNA downstream 467017 27599214 ~ 27711704 (-) True AMCG00020650
AMCG00020659 mRNA upstream 59139 28250873 ~ 28265191 (-) True AMCG00020659
AMCG00020661 mRNA upstream 133303 28325037 ~ 28328300 (-) True AMCG00020661
AMCG00020662 mRNA upstream 137251 28328985 ~ 28342177 (-) True AMCG00020662
AMCG00020664 mRNA upstream 240045 28431779 ~ 28450361 (-) True AMCG00020664
AMCG00020666 mRNA upstream 289748 28481482 ~ 28487871 (-) True AMCG00020666
TU80934 other downstream 929045 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 2260091 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 2273110 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 2848151 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 2875740 25298802 ~ 25302981 (-) False AMCG00020590
TU81066 other upstream 34801 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 133573 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 596846 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1189581 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 1338185 29529919 ~ 29533117 (-) False AMCG00020685

Expression Profile