RNA id: AMCG00020662


Basic Information

Item Value
RNA id AMCG00020662
length 4872
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00020662
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28328985 ~ 28342177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCGAAGAAGGGGAGAccagagtgagagggagagagagcgccAGAGACCCGAGGAAGGACTAGACTTTTCATCCACAGCCATCCGCTATCACAGGAGTCCCGCAGCTCCCGGAGACATCATGAGTGGGGGGACCCCGTATATCGGTAGCAAGATCAGCCTCATCTCGAAGGCCGAGATTCGCTACGAAGGGATTTTATACACTATCGACACCGAAAACTCGACCGTCGCACTCGCCAAAGTGCGATCTTTTGGCACTGAAGATCGTCCCACGGACAGGCCTATAGCACCACGAGATGAGGTTTTTGAGTATATCATCTTTCGGGGCAGCGACATCAAAGACCTCACTTCATCCTTGGGTTCCTCCCCTGCTGCGTCATTCCAGTCTGTGGGCTCCTATGCCCCTTTCAGCAGGGGCCCAGTTTCCGGATACAGCCAGTTCACCCCCAGCCCCCTGGTCAGCCAACAATTTGGTGCCGTAGGAGTGGGTCGTTCCAGTCCCCAACTGGACCCCCTGAGGAAAAGCCCCACCCTGGAGCAGGCAGTCCAGACTGCCCCCACGTCCGGCCCGGCACCCACTGCTTCCCTAGGCCGCAGGAGCCCCGCCCCGGCCAGACCCATACCATCATCCGCCAATCAGAAAGCAGCTGAACTCCAGGAGCAGAGGAGGGGTACAGATGTGCAAAAAATGCCAAGACCAGATGCAGAACAAATCAGAAATGAGAACAGGGAGGCTGCCAAACGGCAAGCAGGACCTCCTTCTGCTCGGCGCGGACGTGGGGGTCACCGTGGCAGGGGCCGCTTTGGGGTCCGGAGAGACAGCCCCATGAAGTTTGAGAAAGACTTTGACTTCGAGAGTGCTAATGCCCAGTTCAATAAAGAGGAGATTGACAGGGAATTCCAGACAAAACTGAAGCttaaagACGATAAACCTGAAAAGCCAGAGAAAGCGGTCAATGGAGAGGATAAGGGCGACTCGGGGGTTGAGACTCAGAACAGTGAAGGCAATGCGGATGAGGAAGATCCGCTGGGACCCAACTGCTACTACGACAAATCCAAGTCCTTCTTTGACAACATCTCCTGTGACGATACCAGgaaagcTGCAGAAAAAGCTGGAGTTTCAGCATTCCCGAGagagaggaggcagaCCTGGGCAGAGGAGCGGCGGATGAACGCAGAGACCTTCGGCATCCCACTGCGCCACGGTCGGGGCCGCGGTGGATACCGGGGCCGAGGCGGCATGGGCTTCCGTGGCGGCAGGGGCCGCAGCGGGGGACGGGGGAGTTTTGGCCCTCCACGCGGAGGAGGAGGCGCCTTCCGGGGTGGCTTCAGAGGAGGACGGGGCGGCAGGGAGTTCTCAGACTTTGAATACAGGaaGGACAATAAAGTGGCTGCATAGGAGGCCAGGAAGACTGATCCAAAAAGAAATGTAGCTCTTCATGGTCCAGAAAATGTTTAGGTTTCAACTTTTGACAGAAGAATGAATAAACATACTTGCTGTATATTTGTCACCAGCACTGGGGTAGACTGCTTGACTTCAAAGGGtgtaatgcagttttttttgttttgttttttttcctttaaaaaaaaaaaaaaaaaatctaaaacgaTCTTGGAAATCTTAAGCTATGTTTTGGAATATCAGCAGAAGGATGAGACAATTTATGTATAGATAAACGTACTTCAATGGATCTATTCAGTATTTTTGCATCAATATTGAGGTTTTTTTCTtactaaaacaatgtatttgataaCGTTCTGTTAGGTGTAAAGATGTATGCAGATGCCCGCTGATACTGTGATGAGAGTACTTTGATCACTGaaatagctttattttttgGATATATCCTGTAATGTACCTTAGAAGCACCAAATTCCTGTATATAGCCAGTTGGGTTCCAGTTACTGCTTTCTACAGTTTCTTTCCACTTCACATATCTTTATACCCTGTTTATTCCCAACTTTAAACTGCCTGCTGTATTTTGCCGAGTATCCCTGTTTTGAAATACTCTGGTTTTTACACTTTGCAGTTTCAATATTAATGGGTATGTCAGTCCCATGTGGTTTCCACATTCGGACATGGTCTAGGCGTCATAGTGAGTAGACATTACAAAGTAAGTGCTGGTGTGGCGAGGTGAATGCAAGATACTGAAGTTCTTGTTTCTATTCTGGCTTTACTGTTTTGGTGTAGCTAGTCTCTGCGAAGCCCCGGCTAAGGCTCATTCACACTGGAAGCTTGTAAATTGAGATCTACTTTGCAGTCTCTGGAAGCAGgacccttttcttttttaacttcgTTGTGCAGAACACATTGGCATTAACTTTCCCAATGCCGTTTCAGGTCTTTCACAGGATCAGAAATGCTGAATGTATTTACTTTCCTGAGTGAACTATtattcatttcagataacattttattctgcCCCAAAGGGTGGTACCTTGAGCACATCCCCTCCAGTCTTCTAAAGAGCAACTCTTAACCTTGTTTACTGCAGGTGGTTTGAAGCAGTAGTATGTTTTTGATAACTAAAGCCTAATAGTGCCAATAGCAGtggtgtgtggtggtggtggtggtggtggtttgtTAAAGTTTTCACCCATCTGTAACTAGTCCTGAAATCTGCACCCCAACCCCAACTAGGTTTATTCCAAGAAGGCTACATGcttttttgatttattattattttttaaacttgccTCATGAGTTTTTAATTCTGATTTAGAAAATTTGGAAATCTGTTACACACGTTGTAGAAATGTGAGCGTTATCAAGTACATGCTGATCCAGTAGAGATCCGGTAAGAGAACAGGCATGATGAATGGCTTTTGTGAAAAGTGGAATCATTTCAGATGTGGAAGGATATAGACTTGAGATTGAATAGTGCATGATGCATCTGGTCACATTACCAGCAGTGCTTCGATAGTACTTAAGTCAAAATCTTTTGTTTAAGAAACTGTAAGGGAGAGACGGAAGTGAAAAAGTTGATAAAACCCATAACATTGCTTGAACTGCAGCATCTTTGAGTTTCTAGAAGAAAAGGAACTAAGAACGTCTagctgaaatgtattcaattgcACTTTAAAGAATAGTACTGATTTATTAAACTGACTGCCATGTTGTAGAGTGCTGAATTCCCTaagcattattttgtatttacatctTGAAGAGATGATTAAGGAATAAAGCCGGTGCTAATTGTGTCCTGCACTACCTGTAGTATCCTTTGTGAATGGGCCTTGGGAGCTGCAGTTCAACACACGCATTGCATTTAAGGCTTTAggttttaatgttaatatgtaAAGGTTCCAGTAGTTGGTATTGCTTCCTAAAGTTCACTTCTAGTAAGTATTAATAGTTAACACAGGTGAACGGATACCACAGCTCTCATTTAGCCAGATTTTGTGCACTTGCCCCTTTTGTACATAGAGGGGAGACTGTGGTACAATACAGGATTTTCCCCAAATAAGGATAGGTCAGACTTTATAAAAAGTCtctaactttaaaaacaaatttagtTGGAAGCTTTTTTTCCCATGGGATCGGAAAATGCTGCATAACAGGACTTCATATTTGTCATGTCTtataaaatgatacaaaccTTTTGTGATTTTGTCTTTGTTACAATTTTACATACTGTACACATACTACATAGATCTGTTGTTCTCTACAGGAAAAGTCCCCTTTATATTTGCAGGTgcccattttaattttttggtgAAATTGAATCAAGCACTGTCCTCTGAAGTGCTATGTCTAGTAACTGAGTTCTTaagtgattatatattttaatatgattttgtaGTTTACAAAGGCCGTTGGGTTAAAAAAGGGAtccaaagatttaaaaaaaataaaggaatcgATTTTATTGGTCTCATTTCACATTGTCCTCAAAGTTGGCTCTGTACTGGGGATAAATGTATTGTGGTTGGCTGCTcactggaaggaaaaaaatatttaattaataaaattcatttagaaaagaaaatatcaatAGGTTATTTAAAGCACTACAAGGAAAACCTCTTCTAGGTAAGAGGGGACAAATAGGGCAGCTAGTAATAAGAGCAATGTCCAATAGTTTAATGTACAGTTTGACTGGAGCTTGTAGTGAATACACAGAACACTGCATGATAACCATGCCTTGTGAGAAGCCACAAAATCATGACACTGAACAACTTGGACTCTcgtttttgttcatttcttgAGAAGAGGCAGttcctgtaatgtgttgcaatAACTATATTACTGAAATTTCCCATGCGAatttaagaaaggaaaaaaaatgtacataataccAAAATGCTGTATGCTGTGAaggtttaattatattagttaCTCCTTCTTAACCTCTGGAATAATAGCCAGATGTTTTGGTGTTCACAACTTGAGCAATTTAACAGCATGGTGTACTTTCAGTGTGCCTCGCCATACAGTGAGGTTTTTATTCAATGCTAAGAATAAACAGTTGTTCAATATGTtggtctgtgttttattttattttcaatacagtgcagtttgcatttttttttccagttcttgAAGTACCCAAGAACCAAGACCTCTATTGTAACATTAAAGGAAGCAACTTTCAGTAGCTTTAAAGCTATACATCTTGGTGGCCTCAGACTGTGGCATTTCATACGTATGATTAATGGCAAGAATTTACTCAACCAAAATGTACAGGGTACTACATTGATTTTGCAGCCTCATCTATTAACTAGAGCTAGCTTTGGAGCAGGCTAGTTTTGCTGTAACAGAATATATTTGTAGTTCggttttaaagtttatttccctctgtatgtttgttttagagcttttaattgtctttgttttgttaattaaaactcaataaaaaaaaaaatcttgaaa

Function

GO: NA

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81115 lncRNA downstream 5821 28316769 ~ 28323164 (-) True G64847
TU81049 lncRNA downstream 89911 28185609 ~ 28239074 (-) False AMCG00020657
TU81054 lncRNA downstream 141554 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA downstream 141554 28185609 ~ 28187431 (-) False AMCG00020657
TU80977 lncRNA downstream 908339 27420366 ~ 27420646 (-) True G64745
TU81159 lncRNA upstream 515812 28857989 ~ 28858354 (-) True G64886
TU81188 lncRNA upstream 654215 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA upstream 654215 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA upstream 654240 28996417 ~ 28999532 (-) False G64912
TU81290 lncRNA upstream 917380 29259557 ~ 29314059 (-) True G64991
AMCG00020661 mRNA downstream 685 28325037 ~ 28328300 (-) True AMCG00020661
AMCG00020659 mRNA downstream 63794 28250873 ~ 28265191 (-) True AMCG00020659
AMCG00020657 mRNA downstream 137251 28178721 ~ 28191734 (-) True AMCG00020657
AMCG00020658 mRNA downstream 181138 28137230 ~ 28147847 (-) True AMCG00020658
AMCG00020653 mRNA downstream 293576 27863475 ~ 28035409 (-) True AMCG00020653
AMCG00020664 mRNA upstream 89602 28431779 ~ 28450361 (-) True AMCG00020664
AMCG00020666 mRNA upstream 139305 28481482 ~ 28487871 (-) True AMCG00020666
AMCG00020669 mRNA upstream 462024 28804201 ~ 28804674 (-) True AMCG00020669
AMCG00020672 mRNA upstream 659594 29001771 ~ 29013295 (-) True AMCG00020672
AMCG00020677 mRNA upstream 717238 29059415 ~ 29071096 (-) True AMCG00020677
TU81116 other downstream 673 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 99338 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 1079309 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 2410355 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 2423374 25898428 ~ 25905611 (-) True G64470
TU81155 other upstream 446403 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1039138 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 1187742 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 2180809 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 2461057 30803234 ~ 30808846 (-) False AMCG00020702

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01057323_00000685_00004361.mRNA True 1297 mRNA 0.46 5 CI01057323 685 ~ 4975 (+)