RNA id: AMCG00020666


Basic Information

Item Value
RNA id AMCG00020666
length 1167
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00020666
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28481482 ~ 28487871 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCGAGgCTCAAAGATCAGAGTGAAACCAAGACAGACAACAAGAAAGGACCTGTGTACGTacagcagggagggagggaaggccGAGCCGGACCCTGGGGATGGAGTGAGGGGTAAGGAGGCCCTGTCGGGGGCCATCTCCCCTATGCAGTTTCCTGCCTTCGAAGGGAACAGGCAGTTGGGGGCCCAGGGATCCAGAGAGATGGAAGGCAACGGCCTGGATATCAATCCAGCCCGCATCACGAAGCGGCGGCGGAagctgctgctgaaaaacacCCTGCTGGCACTTGCTCCCAATGCCACCACCCTGCCCCCTACCTCGGCAAAGTGGCAGATGCTCTCCACGATACAGGAGGGCAGGAAGCGCCTGATGAAGGAAGTGTGTGCCAAGTACAAAAGCAACAGCAAGAGGACTATAACGCCCTACCATGTTTCCAGGATCTTCGTGGAGGACAAGCACAAACTGCTGTACTGCGAGGTGCCCAAAGCCGGCTGCTCCAACTGGAAGCGGGTGCTGATGGTGCTGGAAGGCTTTGCCTCCTCCACCAGGGATATCCAGCACAACACGGTTCACTATGGCAACCACCTGAAAAGGCTGGACAGCTTCGACCACAGGGGCATCTCCCAGCGGCTGGAGACCTACACCAAAGTGCTCTTCGTCCGGGAGCCCTTCGAGAGGCTAGTGTCAGCCTTCAGGGACAAGTTCGAGCACCCCAACAGCTACTACCACCCCGTCTTCGGGAAGCCCATCATCTCCAAGTACCGCGTCAATGCGTCGCGGGCCGCCCTCAGGACAGGCGCCGGCGTGACCTTCAAAGAGTTCGTTCAGTACCTCCTGGACGTCCACAAGCCTGTGGGCATGGACATCCACTGGGAGCATGTCAACCGCCTCTGCAGCCCCTGCTTGCTGGACTACGACTTCATCGGCAAGTTCGAGACCATGGAAGAGGACGCCAACTTCTTGCTGCACTTGACTGGGGCGCCCCGCAACCTCACCTTCCCCAGCTTCAAGGACAGACACTCCCAAGAGGAGAGAACGTCTGCCCGCATCACCCAGCACTACTTTGCACAGCTCACGCCCCCCGAGAGGCAAAGGGCTTACGACTTCTACTACATGGACTATCTCATGTTCAATTACTCCAAGCCTTTTAAAGATTTGTACTGA

Function

GO: NA

KEGG:

id description
K09672 CHST8; carbohydrate 4-sulfotransferase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81115 lncRNA downstream 158318 28316769 ~ 28323164 (-) True G64847
TU81049 lncRNA downstream 242408 28185609 ~ 28239074 (-) False AMCG00020657
TU81054 lncRNA downstream 294051 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA downstream 294051 28185609 ~ 28187431 (-) False AMCG00020657
TU80977 lncRNA downstream 1060836 27420366 ~ 27420646 (-) True G64745
TU81159 lncRNA upstream 370118 28857989 ~ 28858354 (-) True G64886
TU81188 lncRNA upstream 508521 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA upstream 508521 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA upstream 508546 28996417 ~ 28999532 (-) False G64912
TU81290 lncRNA upstream 771686 29259557 ~ 29314059 (-) True G64991
AMCG00020664 mRNA downstream 31121 28431779 ~ 28450361 (-) True AMCG00020664
AMCG00020662 mRNA downstream 139305 28328985 ~ 28342177 (-) True AMCG00020662
AMCG00020661 mRNA downstream 153182 28325037 ~ 28328300 (-) True AMCG00020661
AMCG00020659 mRNA downstream 216291 28250873 ~ 28265191 (-) True AMCG00020659
AMCG00020657 mRNA downstream 289748 28178721 ~ 28191734 (-) True AMCG00020657
AMCG00020669 mRNA upstream 316330 28804201 ~ 28804674 (-) True AMCG00020669
AMCG00020672 mRNA upstream 513900 29001771 ~ 29013295 (-) True AMCG00020672
AMCG00020677 mRNA upstream 571544 29059415 ~ 29071096 (-) True AMCG00020677
AMCG00020676 mRNA upstream 584435 29072306 ~ 29096123 (-) True AMCG00020676
AMCG00020675 mRNA upstream 647458 29135329 ~ 29140819 (-) True AMCG00020675
TU81116 other downstream 153170 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 251835 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 1231806 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 2562852 25898428 ~ 25918630 (-) False G64470
TU81155 other upstream 300709 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 893444 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 1042048 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 2035115 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 2315363 30803234 ~ 30808846 (-) False AMCG00020702

Expression Profile