RNA id: AMCG00020672


Basic Information

Item Value
RNA id AMCG00020672
length 2298
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00020672
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29001771 ~ 29013295 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCCctcttgctttgttttgccCGGCAGTTTCCGGAACTTTGACCTGGAGGAGTCGCTGCAGTGTGCGAGCGACTGGCTGCTGATGGGCCCCACCTGGAGAGACGAGTACCGCGTGTGTGGCTCCCTCATCCCCCAGCCCTTCATCTCCACACGCAACCACGTGTGGCTGTTTTTCCACTCGGACCGCAGCACCTCCGGACAGGCCCAGGGCTTCCGCCTCTCCTTCATCCGTGGGAAGCTAGGCCAGAGCAGCTGCCAGAGTGACGAGTTCCTTTGCGGGAACGGCAAGTGTCTCCCCACGACCTGGAAGTGCAACGGCATGGACGAGTGCGGCGACGGGACCGACGAGAAGAGCTGCACGCCCCTGCCCACCGAGGCCCGGCCCAGCCTGTGTCCGCCGGGTACCTTCCAGTGCACGCAGGCCCAGTCCACCCAGTGCCTGCCCAACACGCTGCGCTGCAACTCGGCCCGGGACTGTGCGGATGGCTCCGATGAGGACAGCTGCCCGGACACGTCCTGTGGCAAGCGGCTGGGCAACTTCTACGGCTCCTTCGCCTCGCCCGACTTCTTCCGCCCAAACCGCAGTTCCTCTGACCTCCGCTGCTCCTGGTTTGTGGACACCCAGGACCCCAAGCACATCATTCTCCAGCTGGACCTGCAGCTGGGGTTCAGCGACTATGTCAGGGTGTACGACGGTATCGGCGAGCGCAGCGACCGGCTCCTGCAGACCCTCTCCTACCATAACAACCGCCGGCCCGCTATAGTGGAATCCAGCCGGGGACAACTCACCATCCTGTACCATGCCAAGCCCAGGAGTGGGGGCCACGGATTCAATGCTACCTACCAGGTCAAAGGTTATTGTTTCCCGGGGGAGCACCCCTGCGGCAGTGACCAGGGCTGCTACTCTGATCGGCAGCGGTGCGATGGTTACTGGCACTGCCCCACCGGCAAAGACGAGGAAGGTTGCCAGGCTTGCCAAAAAGGGGAGTACCCTTGCGAGGGGGGCAGTGGCACCTGCTATCCGGCTTCAGAGCGCTGCAACAACCAGAAGAAGTGTCCCGACGGCTCTGACGAGAAGAACTGCTTCGCCTGCCAGCCAGGCAACTTCCACTGTGGCACCAACCTGTGCATCTTCGAGACATGGCGCTGCGACGGCCAGGAGGATTGCCAGGATGGCAGTGATGAACGTGACTGCCTGGTGGCTGTCCCCCGCAAGGTCATCACCGCCGCCCTCATCGGCAGCCTGGTGTGTGGCCTGCTGCTGGTCATCGCACTGGGCTGTGCCTTCAAACTGTACTCCCTGCGCACCCGCGAGTACAGagCTTTTGAAACACAGATGACCCGGCTGGAGGCGGAGTTTGTGAGGAGAGAAGCCCCGCCCTCGTATGGTCAACTGATCGCTCAAGGCCTTATTCCCCCAGTGGAGGACTTTCCTGTCTACAACCCCTCTCAGGCCTCCGTCCTCCAGAACATCCGCACGGCCATGCGCCGCCAGATCCGCCGCCACTCCTCGCGCCGCGCCTCCTCCCGCCGCCGCCTGGGCCGCCTGTGGAGCCGGCTGTTCCACCGCGGGAGCAGAATGCGCGGCCAGATCCCGCTGCTCACCCCCCCCGGGGCAGCCCACCCCAATCTAGGCGGCGCCCCACACAGCTACCAGGCCGTGGGGGTGGGCGGGGGGGGTGCGGGACATACGCCCTCGCCCTGCTCCTCCTCCACAGCGCTGGGCCTGGCTTTGGAGGAGCAGACGGGGGGGTTTTGCCGGCCTCCTACAGACTCCACGCTCTCGCCTCCCTCCCCTCCTTCGGCTACTGACAGCTTGGAGGATCTTTCTGTAGGGACTCCTGGCTCGGAGGCCTGTGGTGGCTCCTGTAGCCAGTGTCACAGCTCTAGGCCACCCCCTCCTGGTGAGGTAGACAGTGTGGGCCCCAGGGCGGCCTGCTGCAGCTCCATGGGGCACTCCAGCTCGGCCCCGGAGCTCATCAGCAGCTCCTACAAGCGCAAAGTGTCTCGCAAGCTGGTCCAGGGCCTGGCTGCCAATCTACGAGGCGTGGGCCTGCATCACTACTCGGCCCTGGGCAGCTCCCAAGCTGCTGACCCCCAGCCCTCCTCTCGCCCACTGGGGGAACATCACACCCCACTCCCAGCCCCGCGGGGGCCCTCAGGGACTGCAGACGCATATCACAGGTGCCATTCTGTGGAAGTGCCAATCCAGGAAGAGCCTGGGTTGCTGGCTGAGAGCCACCAGGCCAGTAGCGAAGATGACGACGACGACGAATCCCTTCTCATCTGCTGA

Function

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81188 lncRNA downstream 138 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 2239 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 2239 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 143417 28857989 ~ 28858354 (-) True G64886
TU81115 lncRNA downstream 678607 28316769 ~ 28323164 (-) True G64847
TU81290 lncRNA upstream 246262 29259557 ~ 29314059 (-) True G64991
TU81330 lncRNA upstream 872306 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 969818 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 1113394 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1521997 30535292 ~ 30535896 (-) True G65050
AMCG00020669 mRNA downstream 197097 28804201 ~ 28804674 (-) True AMCG00020669
AMCG00020666 mRNA downstream 513900 28481482 ~ 28487871 (-) True AMCG00020666
AMCG00020664 mRNA downstream 551410 28431779 ~ 28450361 (-) True AMCG00020664
AMCG00020662 mRNA downstream 659594 28328985 ~ 28342177 (-) True AMCG00020662
AMCG00020661 mRNA downstream 673471 28325037 ~ 28328300 (-) True AMCG00020661
AMCG00020677 mRNA upstream 46120 29059415 ~ 29071096 (-) True AMCG00020677
AMCG00020676 mRNA upstream 59011 29072306 ~ 29096123 (-) True AMCG00020676
AMCG00020675 mRNA upstream 122034 29135329 ~ 29140819 (-) True AMCG00020675
AMCG00020678 mRNA upstream 207385 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020681 mRNA upstream 323409 29336704 ~ 29368396 (-) True AMCG00020681
TU81155 other downstream 204815 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 673459 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 772124 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 1752095 27246014 ~ 27249676 (-) True AMCG00020639
TU80657 other downstream 3096160 25898428 ~ 25905611 (-) True G64470
TU81300 other upstream 368020 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 516624 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1509691 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1789939 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 3347940 32361235 ~ 32365142 (-) True G65549

Expression Profile