RNA id: AMCG00020675


Basic Information

Item Value
RNA id AMCG00020675
length 3429
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00020675
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29135329 ~ 29140819 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCACTTTTCAGCAAATGGCGCTTACATGTTGTATGAAACGTGAGATCAACGCCATGGACATAACGAAATAGAAATGCAGACTTTCCATTCAAGTATAGTTAGACATGTCTGTATGAAGAACAGAATTCCGGGGATACCAATTCCGGGCAGGGGCACCACCATGATTTGGATGAACTTTACACTAGCCAGTAGTTTACACCTGTGATTTCAAGAAATACTTTCTAGGATCCGTAATCGGAAACAAAGGCGCACTTTCTCTGCACGGCCGGTACCTGGTGCTCAGCCGCGGAACAGGGCGATGCAGCGGACAGGCACTCCAGTGCGAGTGGGAGCAGCGCCACCTTACGGCCATGTGGTTGTCAATGAGAAGTGGAGGGGCTCCACCATAGTGCAGGGCTTCCAAGGAAAGATTAAACCAATATTTGAAGATGGCCTGGGGCTTGTAGACTTCCACCTGTCCAACAGGAgctgtgtgttgtatgtttCTGAGAGTGACCTGGTGGCAGGAAGCAACTACAAGAGAAAACTGGTTCGGTTTAGAAAAGCCAGCAAGCTTAATGGGATCATCGTGGTGGAGAAGACTCAGCTGAGTGCGCAGTATTTTGCGGCCGTTCAGAAGTTTGTGGCGTTCGAATTGGGGATGACCCTGCTTCCTGTTGCCAGCCAGACCGAGGCCTCGCAGCTCATTACCCAGCTAGTCCATGATGAGAGTAAAGAGGACAGCCAGAGCCCCTTCCTGAAGAGGAGTGGAGCCAGGCTGGCAGAACCCGTGGTCCTGGCCTTGGTACAGCAGATCCCTGGGGTGGGCAAGGTGAAAGCCCTTGCTTTACTCAACCACTTCCCCAGCATTTACCAGCTGAGCAATGCCACCGCCAAGGACCTGGAGGCCGTAGTGGGACAGACGACGGCACAGCATGTCCGAACTTTCTTCACACACAGCTAGCCGGTACCTCCGCGATGTTTGATTTCAAGTCCTTGCAAATGCTTCTAAAGTCCTTTTCCATAGATTTGCGGTTCCAGAGTATCTCTAACCCCAGAgccaaggtttttttttatggaaaacaacaaaaaacaaggaaattcaACTTACACGTATGAACTTGAATAGGGAATTGAagcattgtaaatatattcattGTTGATGCTGGTATTGATTCTCTGGAATCTGTGTATCTTTTGGGGgaattagaaaattaaaatctattttggattttttaaatgaaggtcAATGAAGGCTTTATTTTAACAGCTCATTTCAGCTTATTTAGCAACTGACAACCATGCAGTATCAGACATCTAGCAGTCCATTTAGGAAAAAAGTATGCTGTGAGCAAAGGGACTCGGAAAGGTTTTGTGAGAGGCTAGAGCTGCATCTGAAAGGGGGAtagggtttctttttttcttcaaatgcgGGAGTTTGGACAGACTTGAAAGACGGTGCTGCTTGCCAGAGACTGCAAACTGCTTCCCTGGGTAACAGACTGGAGCAGGCCTTGCGTCAGCAGTGGTTCTGAAGCCTCCTTTTTAATAAGCTGACCACGAAATGCAGCCTAGAAAGTGGAAATTAAATCTGTGAGTCATTTAaaagacatttcattttaatgggaCATCTCTCTCGGTGTTTATTTTTCGGTTTccttctatttttcttttggctTCTTTTTTTAGGTTTACTTATTTAGATTAGGATTCATTGAAAGGAAAGGGATTTGTATTTCTCAGTTGTAACTCCGTACTCAGGATCTGACAGGGCCAAGAATTGGAAGCTTGCCTTTTTGGATAAGGTTCACACAATTAATAGTGCTGGGTTTTATTCTATAAGATTGCAGTgagaaaacagaatatataatCAGAGCTGTCAAACAGACTTTATCTTCTCCTTGCCCCTATTAAGCAAGTCAGCAGTTTTTCAGGTTTTGAATGTCAGATATGATCTTCACAGGAAGGAATGCCACTGCTTGGAGATCCGTTGTCTGGTAGCACAGCAAAAAGAAacgttcatttaaaaaacatgtatttttttacctCACCTCGTTGTCTGACGCCTAGTACTGTTTGAGATCCTCACCCCTTCGTgtgttagttatttattttattttttgaatgaaaTAGAAGTTCTTATAGGTTGAACGCCACAGTAGTTCTGTTTTGCCTCTTTCTCTatatcaattaaattacatataggATTACATTTTGTGGGCATGGGGGGAATGCCAGATAAAAGATATATTCTGATTTCACAAATTATACAAAAgtcaaatgaatgaatgcagaACAAAAAAGCAGAAGGACATATTTGACTTAATTCCAGTTAAAAGGAAAGTTCTATGTATAAAGGGCATTTTTGTAGTGTGACTTGTGTTTAATGACAGCTTTGTCCTCTTTGCTCCACTGTTTGCCTGTTCCTCATTAAGGCACGTCATCCCGTTGTGGATCTGGAAAGCAGAGCATTTTGATCTTTGAATTATAGCAGCTCCATTCCAAAGCTGACACACTGCCCAGATGTATTATTAGTACATTTCTGAGGCTATTAACCTCATAGAGGACAGAATGTTCAGTTTCCTGTATTTCAGATGGGAGCGGTGGTACGGACAGATCTGGAAGGTCTTCCCATCGGTGTCGGTGTGATGCCTTTTCGGCCAGGGTGGATCCAGGGAGCAATGAAAAGAGTCCAGCGGACAGCTTGATTAGCACATTGTGTTCAGGGAGCATGTATCCAAATGGTTTGTTCAGCAAGCTTTCAGGAGCCAGGCCAAAGTCATTAGAGTTGCCATTTGTTGAGGAGCAGCTGTGACCAAAAGCTCTATCCCTCCCCAAAGCACAGAGCTACAAGCAGCTGCAAATTGTCAAGAACCGTCATTTTGACACCTGTCTGGACACCTGGAGAATCTGATGACTGGAGGTTTTCAAGATCACTGTACTCTTATGGAAGAAGACCTGCCACCCCCTACCTCCAGATGTCATGGCTGGTTACAAACCATTTGCTCTGATCTGTAATTGCTATGATGGAAATACATGTCTCTGAGTCAATTCTCtcataattatgttttctgGTTTAAAAGAGCTAACATAAGTGTATGCTTCATCCAGGGCGGTCCATTTATACatgacacatttgtttttgtaataaaacaaaactgaaaaagaaaagcatgctTTTCTAAGTGCAGTACTAGCATGAGAAACTGTCACACTCTAACAGGTCTGTGACTCCGTATACACTGGACACACTATAATGGGCCTACTTCCATATCAGAGAGAAACGGCCCACCCCATATGGCCATAGAGATTATTTACATTGGCAATAGTTCAGCTATAAGTCTCCTAAATAAATGGTCAGCCACTCGcctccaaaaaaagaaatgaaatgcCTGAATGTCAAATTTAAAGTCTCAGAATTTGCTTCCCCattaaatctttttaaaaa

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10898 FAAP24; fanconi anemia-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81188 lncRNA downstream 133696 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 135797 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 135797 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 276975 28857989 ~ 28858354 (-) True G64886
TU81115 lncRNA downstream 812165 28316769 ~ 28323164 (-) True G64847
TU81290 lncRNA upstream 118738 29259557 ~ 29314059 (-) True G64991
TU81330 lncRNA upstream 744782 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 842294 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 985870 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1394473 30535292 ~ 30535896 (-) True G65050
AMCG00020676 mRNA downstream 39206 29072306 ~ 29096123 (-) True AMCG00020676
AMCG00020677 mRNA downstream 64233 29059415 ~ 29071096 (-) True AMCG00020677
AMCG00020672 mRNA downstream 122034 29001771 ~ 29013295 (-) True AMCG00020672
AMCG00020669 mRNA downstream 330655 28804201 ~ 28804674 (-) True AMCG00020669
AMCG00020666 mRNA downstream 647458 28481482 ~ 28487871 (-) True AMCG00020666
AMCG00020678 mRNA upstream 79861 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020681 mRNA upstream 195885 29336704 ~ 29368396 (-) True AMCG00020681
AMCG00020682 mRNA upstream 277997 29418816 ~ 29457651 (-) True AMCG00020682
AMCG00020680 mRNA upstream 324056 29464875 ~ 29468021 (-) True AMCG00020680
AMCG00020686 mRNA upstream 346469 29487288 ~ 29504412 (-) True AMCG00020686
TU81155 other downstream 338373 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 807017 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 905682 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 1885653 27246014 ~ 27249676 (-) True AMCG00020639
TU80657 other downstream 3229718 25898428 ~ 25905611 (-) True G64470
TU81300 other upstream 240496 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 389100 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1382167 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1662415 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 3220416 32361235 ~ 32365142 (-) True G65549

Expression Profile