RNA id: AMCG00020676


Basic Information

Item Value
RNA id AMCG00020676
length 4200
RNA type mRNA
GC content 0.47
exon number 19
gene id AMCG00020676
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29072306 ~ 29096123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACACCGTAGTTGTAGTAGAATAAACATGGCAGCGTCTGATAGCGACGGCGAGGAGGATTTTGTTTCTTATGGAACTCCTTTAGAGCCCCTCGAAGAagatgAACCTATTAAAAAGCCGGTGCCCATACATGATCAGACGGTCAAGGATGAGAAGGGCAGGTACAAGCGTTTCCACGGAGCGTTCACCGGAGGCTTTTCAGCTGGTTACTTCAACACCGTGGGAACAAAAGAAGgaTGGACGCCTTCAGTGTTTGTTTCCTCGCGGCAGCAGAAGGCAGACAGACAAGCTGTCAGACCTGAAGACTTCATGGATGAAGAGgatcTTAGTGAACATGGAATTGCACCCAGGGAAATTCTAACCAGAGATGAGTTTTCATCTAAAAGGAAGGATGAAATCGGGGACAAAGCGCGCACTCTGGCATCCCTGTCTGCTCCCATCCCCGGAGACACTTTGCTGGAAGAACTCGTCACCCCAGCCAGGATCTCGGTTGGGGTTGAGTTGCTGATGAAGATGGGGTGGAAAGAAGGCCAGGGAGTGGGGCCCAGGGTTAAGAGGAAGCCTCAGAAGCAGAAAGCTGATCCCAGTGTGAGGATCTATGGATGTGCATTATCAACCAATGGATCAGAGAATTCTGAGCAGGACGAAGGTGATGACTACGCTCCCGAAAACGTGACATTTGCTCCGAAAGACCTCACCCCAATAGACTTCACCTCCAAAGATGACCTCCATGGGCTGGGCTACCGAGGGCTGAACCCACAACAGGCCTTGATGGGTGGTGCGAGAGGAGGCCACATAGACCTCTTCAATCTGGACTCTGACCGGGCCACCAGCCTGCTAGGGGGGGGCAAGCCAAGTCACAACAGGAGAGGAGGTGTCTCAGGACAGGCATTTGGGGTTGGGGCACTGGAGGAAGAGGACGATGACATCTACCACAGAGACTCACTCTCTCGATACGACACTGTGATCAAGGATGAGGAGCCAGGGGACGGGCTGTTTGGATGGACGGCCCCGCAGCAATACACGGGGAAGAAAAAGGGCTCTAATAAAGACGTTGCGTACATGGGGAAAATTCTGGAGGGTTTCACGCTGGCTTCCAAATCCACGTCTGCCAAAACAATATATCCCCCTCCTAACCTGCCCAGGGATTATCGCCCAGTCCACTACTTCCGCCCAGTCCTGGACTTGTCCAGTGCCAGCCCTCAGGTGGCACAGCTGCTGCAGGCGTCAGCGGGACACATGGCCCAGGATGACCAGCAGAAAGGAAGACACCAGCTGGATGCCTCCCAAAGGAGAAACCTGCTTGGGGAATCAACCATGGAAGGCCCCAGCTCTGTATTTGACCTCCTGGACAGCCAGGATAAGGAGCGCTTGGCGGGCATCAGGCAGGCAGCAGAGGCAAGGAAGGCATCAATGGTGGCgacagcggcagcagcagcgaAAACCTCCTCCCAGCAGGCCCTCTCCAACCGCTTCGTACCCCCCGCCACCCAGGATACTGCCCTCAGCGCCTGGGAGGGTGTCTCCACGGACAGCAGTCCCACATTTAGACCCTTCGAGAAGAACCCCGGGAAGCAGACGCGCTACGACAACTACATCACCAAGCTCAAACAGGGCCAGAAAGATGCCCTGGATTCCAGCCTGGATCCCCAGATGACTGAGTGGGAGCGCGGTCGCGAGAGGGATGAGTTCATTCGCTCTGCCATGCTTTACAAACCCACCAACTCCACCCTGGCCTGCAGGTTCACGCGCGGGAGACATGAGGATGACACAGACACGGTTGAAGTTCCGCGGGACCCGGAGAATGACGTTGGTGACAAAGAGGCAGCCGTGAAGATGAAGATGTTTGGGAAGCTGACGAGAGAGACATTCGAATGGCACCCCGACAAACTGCTCTGCAAGAGGTTTAACATTCCTGACCCCTACCCCGGGTCAGGAATCGTTGGACTCCCCAAGGTGAAGAGAGACAAATTCTCTGTGTTCAATTTCCTGACTGTGACAGAGAGCAGGCAGCCCGCAGCCCGGGCACTGGGAGGAGACTCGTCAGCACAGAGCCTGCCCACCACCTCCAAGGatGCCCCCAAGCCACCAGAGAACAGTAGGAAGTCCAGGTGGGATGTCTCTGCTCCCAGCACGGTGCCATTAGACCCCCTCAGTGAATTCCTCAGTGCGGCCAGGAATGAGGCGAGTGCAGGGGCTCAAGCAGAGAGCAAGCCAAACGCAGACATCCAGGCTGGTCCCACACAGAGCTCCGAGTCTTCAACACAGAtgaaggaggaagaagaggatgaggaggaagacAAAAGGCCACCCATGGACCTGTTCAAGGCCATCTTTGCCAGCTCTTCGGATGAGAAATCTTCATCGTCCTCTGAAGAGAGTGAGGCAGAAGAGGATGAACAACAAGCTGGGTCCCAGGACAAGCTCCCCAACAACTCTGAAGTTGCAACCGTTGCCCAACCTTTGCCCTCCCCCATCAGCGAAGGACAACAGCTGATTACTTCTTTGACAAAGgaggaaaaacacaagaagaaaTGCAAAGAGAAGCACAAAGCAAAAAAGGAACATAAACACAAGAAAGACAAGAAGCACAAGAAGAAGCACAAGAAACGCAAGCACAAGTccaagcagaagaagaagaaaactgaGGAGGCCAGCGACAGCTCAGACaatgacagtgacagtgatttGGGGGAGGAATCTGGAGCTTTGTCAACCGAAGACCTGTTAAGAAGGATGAAGAGTCTGCGTGGAAAGAAATGACTAACTTTTCCTTGAAGTGCCAGCACTGCAAAATGTCCCGTCTCCTCTATGAGGACATGTAGAGCGCAGTTGCCATGTAACCTCAGCTCTAATGAATGTTAATATCAGATGGTTTTGCTCCGTACCTTAATCAAAAACTCCACTTCCCTGTAAATAAAGTGTTATGTTTTGTCTCCATTCGTGACCTTAAGACTGAATTTACCAACTTTTTTCAAGTTTTCCAAAAGCAGCGAGGCAGTGACACTTCTTGAAAGCTGGAAGTTATTTTCTGAACACAACACGTTTTTCAAACCATCTGTTTCAAACACTAACAGATAATGGGAttctttttaatagttttgtggTGTCTATGTTGGCATTTTCTAGACAATTATCCACTTCATGGGCACATGTTTTTATGgctttttaaatggaattttGTCGGAAAGGTTAGACATGGAAGGCTGGAGAATGCCTTGCATAAAGAATGGGCACACCAGTAAGAGTGATGTTTGAGTGTTAACCGATACTTCAGCTTTTCATGAGGCCAGGAGGGGTAATAGGGAATAGCTATAAACAATTGTAAAGTGTTCAGCCCTTACAGCCAGTATTTATTAATGGAGATGGCATGCTGTATCTACCCAGGAAACAtcacaaaagtattttcttcCGAACCCCTTTAGTTCCAGCCTGTTATGTATGCACTCGGTAacattgtacacacacagaTTTTGTTAATGAAACTTAATGCAACAATTTTTTTCCTGTCTTGAAACTAAATTATTTCTTATGTTAGAATTAAAACTGGTTTATAAACAAGCATGTCATGTAAGGTATTCGGGgaattatacaataatattgCAGTAGTTGATCATacaaggtgtttttttgtttaatttgtcagcCTTTAATCTGCTTCATATATTTGATCTGCATTGACATTGAAAAGCTTTTCATCACAGCAGGCTTTCTTCAGGAAAAGTATTGgcaaacattttgttctcagtgATGAgcttttcatcattttaaaagttgatTCAATTTCAGGATTTACAGTTTTACTActgatttgaaaatatgaatgtgcaatacttatattaaataacaaatttgGAAGTAGTCtgattctaatttatttaacatcTAGGCCTAATGATTTGGGCTAATTACCATAGAAATCTATTGGCTAGCACTGTTAATAGAATGCTGCTGTTTATCACATTTTGCTTTCCAAATAAAAGTATGTTTCCACTTACAACTATACATCAGGGATTCTTGAAAgatgggactttttttttttcaaaataaaaatctcctATTAactatgtttaaaatgtataccaaCATCTTGGCTAGCAAACCATGTAAAGGAACAACCTCCTGAtgtataatttcaataaaaggtaaatgttttgatttttaataggATTTATGTCAACTCCACCAGACAAAATAAAA

Function

GO: NA

KEGG:

id description
K13123 GPATCH1; G patch domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81188 lncRNA downstream 70673 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 72774 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 72774 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 213952 28857989 ~ 28858354 (-) True G64886
TU81115 lncRNA downstream 749142 28316769 ~ 28323164 (-) True G64847
TU81290 lncRNA upstream 163434 29259557 ~ 29314059 (-) True G64991
TU81330 lncRNA upstream 789478 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 886990 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 1030566 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1439169 30535292 ~ 30535896 (-) True G65050
AMCG00020677 mRNA downstream 1210 29059415 ~ 29071096 (-) True AMCG00020677
AMCG00020672 mRNA downstream 59011 29001771 ~ 29013295 (-) True AMCG00020672
AMCG00020669 mRNA downstream 267632 28804201 ~ 28804674 (-) True AMCG00020669
AMCG00020666 mRNA downstream 584435 28481482 ~ 28487871 (-) True AMCG00020666
AMCG00020664 mRNA downstream 621945 28431779 ~ 28450361 (-) True AMCG00020664
AMCG00020675 mRNA upstream 39206 29135329 ~ 29140819 (-) True AMCG00020675
AMCG00020678 mRNA upstream 124557 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020681 mRNA upstream 240581 29336704 ~ 29368396 (-) True AMCG00020681
AMCG00020682 mRNA upstream 322693 29418816 ~ 29457651 (-) True AMCG00020682
AMCG00020680 mRNA upstream 368752 29464875 ~ 29468021 (-) True AMCG00020680
TU81155 other downstream 275350 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 743994 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 842659 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 1822630 27246014 ~ 27249676 (-) True AMCG00020639
TU80657 other downstream 3166695 25898428 ~ 25905611 (-) True G64470
TU81300 other upstream 285192 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 433796 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1426863 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1707111 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 3265112 32361235 ~ 32365142 (-) True G65549

Expression Profile