RNA id: AMCG00020680


Basic Information

Item Value
RNA id AMCG00020680
length 1864
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00020680
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29464875 ~ 29468021 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGGGTCACAGCGCGGCGGTATCTGCCGGTGAACTCGGCCCACCATGAACACGGCTCTGAAGCACTGGAAAGAGGCGGCCACTGTCATTTTTGTGGCAGGAACGAGACACCGAGCCGCTGTGGACATTACAAAGAGGAGCccagtcacctctcccagctATGGCAAGTCTGGGTGGCCCCACAAGTCTGCTTTTGACTACGAGGTGCTGTTGCTGAAGCGAAGCGGCAAAAGCGGCTTCATGCCCAACGCCTACGTTTTCCCCGGAGGCCTGGTGGACTCCTCGGACTTTTCCAGTGACTGGTTGgatatttttaagtgttttcgCCACTCTCCAAATTTCGGTTTGGGAGTCGTCAAGCAGCCACCTCATACGAGACCGGCCCTGTTTGCGACGGACAGAGCCAGCCTGGGCTCTCCCATCCCCGGAGACGTTGCGTTCAGGATCTGCGCGGTGAGGGAAACTTTCGAGGAGTCCGGCATCCTGCTGGTTCTCCCTACCAGGGAAGCCAGCGCTTCAGCTCACAGTCTCCGCAGCAGTGATGCTCCTCCGCTGACTCGGATAGCCCGGCTCTGCGATGCAGGCGAGCTCGCTAAATGGAGGTTGTTGGTGAATGAAAATCCCTTCAATTTCATCCAGATGTGTAAAGAACTGGACTGCGTGCCCAACATCTGGGCGATGCACGAGTGGGGGAACTGGCTGACCCCCACTGGCATCTATGGCAAGGAAAGGAGGTACGACACTGCCTTTTTCATTTGCTGCTTGCAAGATGTCCCTCATACCATGCAAGACGAAAAGGAAATTGAGCATTATAAGTGGTCCACGCCCTCCGAGATTCTCCACAGCTACCAGGCCCGGGAGATCTGGATAGCCCCACCACAGTTCTACGACCTGGGCCGGATGTGTCACCTCCCCCAGCTCCGGGACCTGCACAGCTTTTCCAGGAGCCGCGCTCTGGAAGGCTGCGAGCAGTGGCTGCCGGTCCGTCTTGTTAGCAGTGATTGTTATATAAGCCTCTTACCAGGTGACGACAAGTACCCTGACAATCCCGATTGTCTGGGACTGAACGATATGAACATGGTCACAGAGAAGACTctggaggagctgcagcaggAGAGCTCTGTGTTTCACCGCATAGTTTTCCAAAGCCTGCATGAAGCCACAATCCATGTCAATATTATGCCCAAGTACAAACACCTCCTGCCCTTTGCAAACTCTTCATGGGGATCACAGGCCGATCACAAGAGCCACCTCTAACTTGATCATACAACCTCTTAGCCCACTGGACTATTTTAAATTTTAGGAGATTTCCTcgtgagcaaaacaaaatgagaccttaaaactaaaaaaaaagttttgtgaaGTCTAAGCTATTTTTGGTAGAATGCTATTTTGTGTTAAAGGGAAATGGGGTTTACTTTGAAACTGTACATTATTCTGTACTATATCCCAAGTTGATTTATTGAGTTATTGCTTGCTTTAACCTGCACTTTAACCTATTTTTGTGCTTCTGGTACCATAAGCTAAGGGGCCTACagttacttatttatattttaggcTTTTGCTGCAACTAtcgtgcatccggaaagtattcacagcgcttcaccttttccacattttgttatgttacagccttattccaaaaggaggaaaataattaatttaatccaaaattctacaaacaataccccataatgacaacgtgaaagaagtttgtttgaaatctttgcaaatatattaaaaataaaaaacaaaaaagcacatgtacataagtattcacagcctttgctcaatactttgttgaagcacgtttggcaccaattacagtctcaagtctttttgagtttTATGCTACAAGCTTca

Function

GO: NA

KEGG:

id description
K13355 NUDT19; nucleoside diphosphate-linked moiety X motif 19, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81290 lncRNA downstream 150816 29259557 ~ 29314059 (-) True G64991
TU81188 lncRNA downstream 463242 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 465343 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 465343 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 606521 28857989 ~ 28858354 (-) True G64886
TU81330 lncRNA upstream 417580 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 515092 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 658668 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1067271 30535292 ~ 30535896 (-) True G65050
TU81372 lncRNA upstream 1148859 30616880 ~ 30617134 (-) True G65061
AMCG00020682 mRNA downstream 7224 29418816 ~ 29457651 (-) True AMCG00020682
AMCG00020681 mRNA downstream 96479 29336704 ~ 29368396 (-) True AMCG00020681
AMCG00020678 mRNA downstream 243473 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020675 mRNA downstream 324056 29135329 ~ 29140819 (-) True AMCG00020675
AMCG00020676 mRNA downstream 368752 29072306 ~ 29096123 (-) True AMCG00020676
AMCG00020686 mRNA upstream 19267 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020685 mRNA upstream 52170 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020692 mRNA upstream 660198 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020693 mRNA upstream 896999 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020694 mRNA upstream 981724 30449745 ~ 30530820 (-) False AMCG00020694
TU81300 other downstream 59239 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 667919 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 1136563 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 1235228 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 2215199 27246014 ~ 27249676 (-) True AMCG00020639
TU81316 other upstream 61898 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1054965 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1335213 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 2893214 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 3139841 32607862 ~ 32610695 (-) True AMCG00020774

Expression Profile