RNA id: AMCG00020681


Basic Information

Item Value
RNA id AMCG00020681
length 4610
RNA type mRNA
GC content 0.48
exon number 22
gene id AMCG00020681
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29336704 ~ 29368396 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACATACATCATGGTATCCATGATTTAATCTTTAAGTATGTGGGAACCATTGAAGCAAGTCAGgATGCTGCTTTcaataaaaccacaagaagTCTACAGGACCTCCAGCAAAAAGACTTGGGTATTAAATCTGAATTGAGTTTCAATATCCCTCGGGCCAAGCGGGAGCTGAGCCAGCTGAACCGCTGCACCTCCCCCCAACACAAGCTACTGTGTCTACGCAAGGTGGCCCTCACCATCATGCAGTCTCCCAGCTCCCGAGTTAACATTGAGGCAATGTGTGCTGACGATCTCCTGTCTGTTCTCCTGTATTTATTAGTGAAAACAGAAATTCCCAATTGGATGGCTAACCTCAGCTACATCAAGAACTTCCGTTTCTGTCATTCCTTCAAAGACGAACTGAGTTACTGCCTGACGTCGTTTGAGGCTGCAGTGGAGTATGTCAGCCAGGGCAACCTCTCCCAGGGCCAAACGGGGGGAGGTGGACTGAACGACAAGCACATCGCCAATGGGTGTGAGGAGGAGGTGAGGAGACTCCTGAGTGAGGGAGAAAGTGAAGAGGAGGGAGTAGAGATGTGCCACCCACTCTGCTCCTGTGACCGCTGCGAGAGACACACGTCCGGGAGGCTGAATGACCCATCCATTGTCACTCCGTTTTCCAGAGATGACCGGGGCTACACACCACTCCATGTTGCTGCTATTTGTGGTCAGTCTTTATTGATAGACCTGCTGGTGTCTAAGGGAGCATTGGTCAATGCCACCGACTACCACGCCCTCACCCCCCTGCACATGTCCTGCCAGAAGGGATACCAGGGAGTAACGTTGCTGCTTCTGCACTACAGAGCCAGCACTGACATCCAGGACAACAACGGCAACACACCCCTTCACTTGGCTTGCATGTATGGACACGAAGACTGCGTGAAGGCACTCGTCTACTACGACGTCCATTCCTGCCAGCTGGACATCCAGAACGACAAGGGAGACACCCCCTTGCACATCGCCTCTCGCTGGGGGTACGAGAGCATCATTGAGGTGCTGCTGGAGAATGGAGCCAGCACGGCCATCCACAATAAGGCCAAGGACACACCCTTCCAGTGTGCCCTCAACTCCAGGGTCTTGTCTCTGCTGGAGCTGACACACAATGGCTTTGACCGAAGACAGAGCAGCAGTGAGtcTCCCAACAGGTCCCCCCAGCCCTCGACAGAGACAAGCAGCCGTCGCTCTTCCCTCTCCAGCTTATCTTCCCTCAACACTGACATCAAACCAGAGAGCAACAGAGGGAGACACAAAGAGGTGGAGAAACTGCTGCGTGCTGCTGCTGATGGAGACGTAGAGATGGTGCGGTATCTGTTGGAGTGGCTGGATGAGGAGCctgaggatgaggaggagggcGCCGGGGCTCTGCTGAAGCCTGACTTCTGTCATCCGCTGTGCCAGTGCCCCAAGTGTGAGCCCACACAAAAGAGGCTCGCTAGCTTGCAGGTGAACGGGCTAGGCGTGAATAGCAGCAACCAAGACGGATTCACTCCTTTGCACGTGGCTGCTCTCCACGGGCACGCCCCCCTGGTGGCCCTGCTCACCCGTCGTGGGGCCAACGTGAATGCCAGGAACGGCCAGAGTGCCACCCCTCTGCACCTCGCCTGCCAGAACAGCCACCTACAGGTGGTGTCCTCTCTATTGGAGTGTAATGCCAAGCTGAACAAGAAGGACCACTTCGGGAACACGCCACTGATCCACGCCTGTCTTCGTGGACACCAGGACACAGCTTCCATCTTATTGAAGAGCGGTGCCTCGGTGAACCTTGCCAACAATCAAGGTAACACAGCACTGCATGAGGCAGTAAGGGGGGGGCACCTGGCACTGGTGGACTTGTTGGTCCATGCGGGGGCCTCTGTCCACCTGAGAAACAAGCGCCAGAGAACACCCCTCGACTGTGCCCAGGAGATGGGTGGCAAGAACACAGAGATTGTGAAGATTCTTCAGAAGGCAACCTCTTATTCGCCTCATGAGAACCCTGCAAAACTGCCAACACCTACAAAGGCACAGCCAGGGAAGACATTATCCTTCTCAAAGCAGATTAGAGCGCTGGATGAGTCACACAGCAGACGGATGGAACAGGTCCAGTCCATTAGCAGaggCCCAAAGTCCAGGAAGCCCATTCCCAGAGAGATGAGCATGCCTTCATTTGACTCTGGCCTCTGTCAGTCTCCTGCCAGTCGGTCGGAGAAGTGCAAGCTGAGGCGGGCCGAGACCCTGGAACGGAGTGGCCCTCTCACCCCCCCCTCTGAAGATCCCGACGAGGTATGGGGTGAGGAGGTGGATGCCCCCCGGAGTAAGACCCTGAGTCGGCGGCACACAGTAATAATGGAGAGCTCCCCTCCAGGACAGGTTGATGACAACCAACACGCCAACATCGAGCAGTCCACAACCCCCACCGACCCCTCCGATCCGACCTTTGAACTCAACGATGGTGCCCTGGGCGACAGCAGGGAAGCTGCCTCCCCACAGCACCACGCAAAGCCCAGGGGCAATGGAATAGATATAATTCCCAGAGAAATGGACGAGCTGGCTTCGAAAACtgtgtgaaacaaaatataataattaaaaaaaaacaaaaaaaacgtttgGACTGTAACACTGGAGATGGTGTTTGCAGCCCTGTGACTTTGCTACCTTGCAAACCGGTCAGGATAGGGCCGGACCGGACACCTCTGGTCAGCTTAACAAGGGCAGTCTAGtccaaaatgaaagcaaaagcTGTAAACGAACGTCAGCACATGGGTGATGGATGTCTTTCTTGGAAAAGAGACGCTGAGATTAACTATACTGGTTGTATCAAAAGTAGATGTTTACtgttaacaattatatatatatacacacacacacacaccgttaTATAGGGAGCATTTGTGCATCTgatttaaagcacttttttaTTCGTCATATCAAGCCTCTAAAAAGGGATGTGCAACTTTCAAAGAGCTGAttctaagtgtgtgtgtgtttaagttagttttatttttttcttaaaagcagAAATATTCAAGGTGTTGTATCTGTGATGTAGGTTCACATCCTGACTTGCACATATGGAGGTATTTCCTACATGAATGTTGGAAGTGTTCTCCCAGACTAGAACTTAACTGGACATCTGGAGTCCACTATGTAGTACTCAAAGACCTCAGCATTTCACCAGATTAGAAAGCAGTGTATACATAACAACacaatatttcttattttgataTTCCCATTTGTTTTTGGGACTGATATTTTACATCTGTGTTATAATACTGCTGTGAAGGACTGGCTTCCAAGGGTATGCCCCGCCTCGTGCCCTGTGTCCACTGGGTTAGGCTCCGGCTCACCGCAGCTCTGTGCTGGATAAAGCCATTATTGAAGATGGATGGGTGCATATGATATTGAAGTCGTGGATTCTCAAAGCAGCTGGTACCTATAGTCGATTGCGTCATGCATCATATAGGCTTTTAtgttacgtttttttttttttctcctgaaggATGAAATGCAATACTGGTCTTGTTATTACAAGTCCAAAAAAAGCCCCCTGAAATGAAACTGGACTTTTCTTCTGACATTTATGCCAAATAGTAAGAGCCTGGTACAACAGGTCCCAGTAAGTATTCATGTTAAGTGTCTGTTCTCTTTGTTCAAGTACAACAAACAAGCTTtgctactctctctctctctccaatttGCTTGTTTCTGTCTTGTCTAGCTTCAACTCACGTAGGCTACTGTGCAAGCAAATCAATTGTCCCTAGTTCCTTTCCAATTAACACTCCTCTCTGTAAAATGTCCTTCTCTGTTGCACTTTTCTcacttgaaaaaatatattcacactAGACTTGGTGGAAAAAGCCAGCTGAGATCTGCATTTTACTTTCtggcttttgttttcatctccTCGCAATACATTGTAACAAGTATGTGCTTGAACTGGCCAAGTCATGTATAATAAGCTTACATACAATTGGCATTCAAATGAAACAGTGAACCTGCCAAGGAACCACACTGGTGATGTGGGCAGGGTTTGCTGTCCTAAAAATAGGAGAGATCTTTATATGCAGTTGTGTGGTTTCAAAATGGCAAATAAAGTCTGGATCACCAGCTTCTTTTGGTACCATTGAATTTCCCTGCACCAAATGGAAATCCGCTTTGAATtggttatttttatacattatacGATTTTAgttattgttgtaattgttggtttgttagaaacattttttttttttccgattGCAGTGAATGTGCCTTAtttaatttgtgccaaaatatAACAGATTTAATAAACTGGTGAGTGCAACGATAACCAGCTACCTACATAACTTCCTTGTTCTTCAAATCTCGATGAGACTTGGCTGAGACCAAGAATCCTTCATGTAATAGAAATATGCAGCTTTCTAGTAAGTATATGTTACGACATTCAAACTCCATGCTGCACAGAACAATGGCAATTATTTATCTTGAGTAACCATTGTTTCAGGGCTGCCTTAACTATCATCAGAGGATCCTCGATTTCAGTAATCATATCGTCCCGCAAAGGACTACATGTAAATCCTGACATCATTCATGCCAGAAGGTGG

Function

GO: NA

KEGG:

id description
K20175 ANKRD27; ankyrin repeat domain-containing protein 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81290 lncRNA downstream 22645 29259557 ~ 29314059 (-) True G64991
TU81188 lncRNA downstream 335071 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 337172 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 337172 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 478350 28857989 ~ 28858354 (-) True G64886
TU81330 lncRNA upstream 517205 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 614717 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 758293 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1166896 30535292 ~ 30535896 (-) True G65050
TU81372 lncRNA upstream 1248484 30616880 ~ 30617134 (-) True G65061
AMCG00020678 mRNA downstream 115302 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020675 mRNA downstream 195885 29135329 ~ 29140819 (-) True AMCG00020675
AMCG00020676 mRNA downstream 240581 29072306 ~ 29096123 (-) True AMCG00020676
AMCG00020677 mRNA downstream 265608 29059415 ~ 29071096 (-) True AMCG00020677
AMCG00020672 mRNA downstream 323409 29001771 ~ 29013295 (-) True AMCG00020672
AMCG00020682 mRNA upstream 50420 29418816 ~ 29457651 (-) True AMCG00020682
AMCG00020680 mRNA upstream 96479 29464875 ~ 29468021 (-) True AMCG00020680
AMCG00020686 mRNA upstream 118892 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020685 mRNA upstream 151795 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020692 mRNA upstream 759823 30128219 ~ 30145527 (-) True AMCG00020692
TU81155 other downstream 539748 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 1008392 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 1107057 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 2087028 27246014 ~ 27249676 (-) True AMCG00020639
TU80657 other downstream 3431093 25898428 ~ 25905611 (-) True G64470
TU81300 other upstream 12919 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 161523 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1154590 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1434838 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 2992839 32361235 ~ 32365142 (-) True G65549

Expression Profile