RNA id: AMCG00020682


Basic Information

Item Value
RNA id AMCG00020682
length 3421
RNA type mRNA
GC content 0.49
exon number 27
gene id AMCG00020682
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29418816 ~ 29457651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTCTGAAGGGAGTTGGAGATGAAGTAAAGAATCCAAAGGAGTATGATGATTTATGGGTCAAGATGAACCTTTTCTACCATCAAGTGAACCAGGATGTTCAAAAGATTACACCGACATCACTGGAGAAAGGGCAGAGCTGGTGCCGGGCCTTTGTGGAATCCCTCTTTTTCAGCACAGAGGGGTACCATGTGATGTGCTTCCTGGTCGACTATGCAGAGCACATCATTGTGAGATCTGAAGAtattcGAGCTCCACTAGAGAAATTTCTTCATCTGCCCTTTTTGGCTAAGAAGTTCAGGCTTGCTCGTGTCCAGCCAGTGACTCTGCTCGTCGACCTCTGTAATGAGAAAGCTGAACTAATCCCTGCAACTTGCTGGGACAGTTCTGCTGTGCAGTATTTCCAAACTCTTGCAGCAGATACCACCCTCACTGAGGCTGTGCAGTGTGGTTTAAAAGGGGACAGTTTGGCTGTTGACCTTTATATGACTATCAAGAATGAAAAGATATGTGTTAATGATGACTTGGTTAATAAAAAGTATGCATGCTTCTCATCAATGGAGAAAACCCTGGTCAGCCCCATACCACATAGTGGTGAAGGGACTCCAGTGTTGGTGTCCTGCAGCATCCTCCCCTCAGTTGACTGGAGTAGTCTGCCCCCAAAACACATGCCTGTGTCAGCACTGATTCCAGGCATTGTGCAAGAGAGAGACCTCCCTCAAGAGGAACAAGttacTGTGAACACAAAGCCTGTGGATTTGGTAGTACAGGAAAAGCCTAATGAAATGGCAACCGTTCCACTTAAAGACTGTGATTCGCAGTGTCCTCTGTCTGAATCGGAGCCAAAAACAAATGATGGACTGGATAATTCACAGGAAAACGTGGAAGACATCAGTGACAAGACTGTGATCAGTCCACCTATTGAGATGATAGAAGAAATGCATGAATTACGTATGGATGATGATGAGCCACCGGTCCTCCACTCTTTCCACTCAAGTGACCTCTCTGAATATCTGAGGCAGGGAGCAGGCTGCACTGCTCTGCCGGACTTTGTTGATGAGCTTTCCTCTGTCAGGTTGTTACAGTTTCTGAACCCTGATCCTCTCAACCCAGAAAGTGAATCAGTGGATGTGACGACCATCCCCTGTGAGCCCCATGGGAGTGGCATACTGGTACATTCTGCCATGGCCATTGATCCCTTCACAAGCCTGACAAGGGCCCCTATCAGCGAGAATCTCAGAAAGGCTCTCTTGAGGCAGAAATTCAAAGGCCCCAGCCTAGCCCAGGCGTACAGTTGGCCTGCTGTGGCACGAGGCTGTGACACGGTGCTGATCTCGCACAACGGGGAGGATCCACTCACCTATATTCCTCCTTTCCTCACCTACCTGCAACTGTCCTCCCTGCAAACCACTCTGCCTTCAAGGACTGGGCCCATAGCAGTGGTCCTCTGTCCAGGATGGGAGAAGGCACAGATCGTGTTTGACATGCTGGAGGAGAACACTGTGTCTCGCCCTCTTAACCCAATGCTGATCTTAGTGATTGTTACCACACCTTTCAGCCTGGTCCGGCTCTTCACTTTCCACTGCTTCCTCTTCCTCAGGCTGTGCCACCTTGTGTTCGATGAGGTGGATGTGTTGTTTTCCCGTGCTCCAGAGGAAATGGCAGCTATACTGCAGCACTTCAGGAAAGCCACCACCTCGGAGGAGAGGGTATCCTCTCCCCAGCAGATCATTGCAGTTGGGAACCACTGGAGTAGGCCGATTGAGAGCCTGGTGAAGGACTACATGACTGATCCCTGTGTTATCATCACTGTAATGGACGAGGCAGCCCTGTATGGCAATGTGCACCAGGTGATTCTGCTTTGTCTGGACTGCACCAAGATCTCTGTACTGCTCAGTGCATTGGACTTCATTCCTGAGGTTTGCCAGAAGACGTTAATCTTCACTAACACTGCACAAGAAGTAGAAAATGTTTATAAGGCTGTGAGCAACACTTCATCATTTTGCATGAAGGCTCACGAGGGCCTGACATACCAGTTTGACTTTGTCATCGAACAGTGGAAGAAAGAGATGGGCCCAGGCACACACATTATCCTGGTTTTGACCAATGACTGTATGAAGGCCTTGGGGATAATGGATGCCACTTGTGTAGTGCACTATGGGTTTCCTAGCTCTCCAAAGCTGTTTGGAAGCCGCTTGTGTAGCATGTTGCATAACTTTCACAACCTGACGGACAAGGACCCTGGGCAAAAGCCACCCCGGATGGCCAAATCAGTGCTGCTGCTTTCTGAGAGGAATGCCCGGCATGCTACTGGAGTGCTGCGGTATTTTGAACGTTCAGAGGCCACCCTGCCACCTGAACTGAAGCACTTTGCGCAGGGAGTGTTGGAAGCCAAGGAGGAGCAGAAATCTGACAGACCACTCTGCCCTTATCTGAAAAGCTTTGGTTTTTGCAGGGAAAGAAGCATCTGTCCAGACCGACACAGACTTAGTCCTAAAGAGGAGAACATGCATCACTCAAACATTAGTTGTATATCGGTTCTGCCATTGTATATCAAGAATGCTTCCTGCTTCTTTGGACGTATAGTGAATAGGAAGGGGGACTGCTATGAGAGTCTAGCAGTGGAGATGGCAGAGTACTATGAGAGCCACAAAGTGAATGCAAAAGTTTTGGAGACAGGCGAGCTTTATGGGATACAGGAAGAGAGTGCGTACCACAGCTTCCTGGATGAGGGCCGCACTCAGGATGTGAAGGCCCATCAGCTGCTGGTGCTGCCCAGCCAGTTCCATAGCCTCCCTCCGCAGGCTGTGGAGTTCATTGTGTGCAGAGTGAAGCCCATAGACAATGAGATGGAGTGGAATCCAAAGGTCAGCAGACGCATAAGTCTGAAGATTAAAGGCGTTCTACATGAAGCTAAAGTTGCTCTGTGCCTGGAAAACACAGTTTGGGTTGATCCAATGGTCCGGGTCACAAGGTTGCCAGGGCTAAAGACTTATGTCAATGAATACAACGTTCGCTCAGAGATCCTGGCCACTGGCATGGGGACTGACAACCCAGGGCATGTGGAGCACCTGAAACAGCTGTGTCCGGACAGGGGTTTCACCAGCACAGAGCGGCCCACTATGCAGGACACATATAATCCCGAACTCAAGTGGTTTCAGAGTGAAGACTGTgttgtattaaacattaaactaaaaAATCCCACAGCACAGGAATATGTTTTTTGCCGTGACAGAGTAACCTACAGTGCCTACGTGGGTGACAAATATTACTATGCAAACCTAGAATTGAATGACAATATTGTAGAAGAAAAGTGCCGTTGTGAGATCAGTTGTAACGAGCCAGTGATGATTCTGGTCAAAGAGAAGAAGGGGGTCTGGAAGAAGCTGCTGAAACACAAggcaggcttttattttttttta

Function

GO: NA

KEGG:

id description
K18409 TDRD12; ATP-dependent RNA helicase TDRD12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81290 lncRNA downstream 104757 29259557 ~ 29314059 (-) True G64991
TU81188 lncRNA downstream 417183 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 419284 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 419284 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 560462 28857989 ~ 28858354 (-) True G64886
TU81330 lncRNA upstream 427950 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 525462 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 669038 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1077641 30535292 ~ 30535896 (-) True G65050
TU81372 lncRNA upstream 1159229 30616880 ~ 30617134 (-) True G65061
AMCG00020681 mRNA downstream 50420 29336704 ~ 29368396 (-) True AMCG00020681
AMCG00020678 mRNA downstream 197414 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020675 mRNA downstream 277997 29135329 ~ 29140819 (-) True AMCG00020675
AMCG00020676 mRNA downstream 322693 29072306 ~ 29096123 (-) True AMCG00020676
AMCG00020677 mRNA downstream 347720 29059415 ~ 29071096 (-) True AMCG00020677
AMCG00020680 mRNA upstream 7224 29464875 ~ 29468021 (-) True AMCG00020680
AMCG00020686 mRNA upstream 29637 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020685 mRNA upstream 62540 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020692 mRNA upstream 670568 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020693 mRNA upstream 907369 30365020 ~ 30420634 (-) True AMCG00020693
TU81300 other downstream 13180 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 621860 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 1090504 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 1189169 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 2169140 27246014 ~ 27249676 (-) True AMCG00020639
TU81316 other upstream 72268 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1065335 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1345583 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 2903584 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 3150211 32607862 ~ 32610695 (-) True AMCG00020774

Expression Profile