RNA id: TU81277



Basic Information


Item Value
RNA id TU81277
length 354
RNA type TUCP
GC content 0.56
exon number 3
gene id AMCG00020684
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29504227 ~ 29575346 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TAGGGAGTGCTGCTGTCAGGAAGCCATGGTGGAGGATGGCACTCGGAGGAGGAAAGGCACTCTAAATGGCAGTGTGGGGCCCTCTGTGGACTCCAGGTCCCTGCACACTGAAGATGCAGTGAAAGCTACAGCACTAAAGAAAGATGTGGGGCTGATCAGCGGAATCTGTCTGATTGTTGGCTCGATGATCGGCTCGGGCATTTTCATCTCCCCCAAGGCGGTGCTGGACTACACTGGAGCTGTGGGgccctgcctgtgtgtgtgggcaGCCTGTGGGGTCATATCCACTCTCGgTGCACTGTGCTACGCTGAGCTGGGCACAATGATAACTAAGTCTGGTGGAGAGCACTCCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81243 lncRNA upstream 186432 29259554 ~ 29339283 (+) True G64957
TU81193 lncRNA upstream 475900 29049493 ~ 29049815 (+) True G64916
TU81167 lncRNA upstream 587551 28937888 ~ 28938164 (+) True G64894
TU81084 lncRNA upstream 1110438 28328980 ~ 28415277 (+) True G64823
TU81332 lncRNA downstream 411219 29986565 ~ 29988128 (+) True G65024
TU81333 lncRNA downstream 411219 29986565 ~ 29988059 (+) False G65024
TU81357 lncRNA downstream 957847 30533193 ~ 30536564 (+) True AMCG00020697
TU81374 lncRNA downstream 1073478 30648824 ~ 30649364 (+) True G65063
TU81377 lncRNA downstream 1121613 30696959 ~ 30700254 (+) False AMCG00020695
AMCG00020683 mRNA upstream 44051 29475169 ~ 29481664 (+) True AMCG00020683
AMCG00020688 mRNA upstream 118477 29406522 ~ 29407238 (+) True AMCG00020688
AMCG00020679 mRNA upstream 206052 29302753 ~ 29319663 (+) True AMCG00020679
AMCG00020674 mRNA upstream 393136 29100637 ~ 29132579 (+) True AMCG00020674
AMCG00020673 mRNA upstream 504327 29020447 ~ 29021388 (+) True AMCG00020673
AMCG00020689 mRNA downstream 5 29575351 ~ 29577695 (+) True AMCG00020689
AMCG00020690 mRNA downstream 66308 29641654 ~ 29850555 (+) True AMCG00020690
AMCG00020691 mRNA downstream 409732 29985078 ~ 29986043 (+) True AMCG00020691
AMCG00020697 mRNA downstream 957847 30533193 ~ 30536561 (+) False AMCG00020697
AMCG00020695 mRNA downstream 1111360 30686706 ~ 30699936 (+) True AMCG00020695
TU81272 other upstream 60003 29464564 ~ 29465712 (+) True G64979
TU81182 other upstream 516114 29008663 ~ 29009601 (+) True G64908
TU81160 other upstream 651643 28873630 ~ 28874072 (+) True G64887
TU80958 other upstream 2107195 27415996 ~ 27418520 (+) True G64730
TU80525 other upstream 3972395 25550911 ~ 25553320 (+) True G64372
TU81412 other downstream 1191678 30767024 ~ 30770927 (+) True G65100
TU81504 other downstream 1587255 31162601 ~ 31217840 (+) True AMCG00020708
TU81555 other downstream 1884156 31459502 ~ 31484470 (+) True AMCG00020715
TU81717 other downstream 2288037 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 2518678 32094024 ~ 32095186 (+) True AMCG00020742

Expression Profile