RNA id: AMCG00020686


Basic Information

Item Value
RNA id AMCG00020686
length 666
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00020686
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29487288 ~ 29504412 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAGTTGTGTCATTTTGGGGCTGGCGGACGACTCCGTGCGCAACGTGTCTGACAGGGAGTGCTGCTGTCAGGAAGCCATGGTGGAGGACGGCACTCGGAAGAGGAAAGGCACTCTAAATTGCAGTGTGGGGCCCTCCATGTACTCCAGGTCCCTGCACACTGAAGATGCAGTGAAAGCTACAGCACTAAAGAAAGATGTGGGGCTGATCAGCGGAATCTGTCTGGTTGTGGGCTCGATGATCGGCTCGGGCATTTTCATCTCTCCCAAGGCAGTGCTGGACTACACTGGAGCTGTGGGgccctgcctgtgtgtgtgggcaGCCTGTGGGGTCATATCCACTCTCGAGCACTCCTACTTAATGGCAGCCTTTGGGTCCATCCCGGCCTACCTGTACTCTTGGACTACCGTCATGGTCCTGAAACCTTCCAGCTTCGCCATCATCTCTCTCAGCTTCGCCAAGTATGCTGCCACCCCTTTCTACCCAGGATGCACCCCCCCTGACATGGCCACCAAGTGTCTGGCTGTTGCGGCCATCATGCTGATCTGCCTGTTGAATTGCCTCAGCGTCAAGCTGGTTACCTACGTACAGAACATCTTCACAGCCGCCAAGCTCCTGATCATCCTGGTCATTGTGGTGGCTGGGATGGTTCTTCTTGCTCAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81290 lncRNA downstream 173229 29259557 ~ 29314059 (-) True G64991
TU81188 lncRNA downstream 485655 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 487756 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 487756 28996417 ~ 28999532 (-) False G64912
TU81159 lncRNA downstream 628934 28857989 ~ 28858354 (-) True G64886
TU81330 lncRNA upstream 381189 29885601 ~ 29885899 (-) True G65023
TU81342 lncRNA upstream 478701 29983113 ~ 29983365 (-) True G65033
TU81344 lncRNA upstream 622277 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 1030880 30535292 ~ 30535896 (-) True G65050
TU81372 lncRNA upstream 1112468 30616880 ~ 30617134 (-) True G65061
AMCG00020680 mRNA downstream 19267 29464875 ~ 29468021 (-) True AMCG00020680
AMCG00020682 mRNA downstream 29637 29418816 ~ 29457651 (-) True AMCG00020682
AMCG00020681 mRNA downstream 118892 29336704 ~ 29368396 (-) True AMCG00020681
AMCG00020678 mRNA downstream 265886 29220680 ~ 29221402 (-) True AMCG00020678
AMCG00020675 mRNA downstream 346469 29135329 ~ 29140819 (-) True AMCG00020675
AMCG00020685 mRNA upstream 15779 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020692 mRNA upstream 623807 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020693 mRNA upstream 860608 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020694 mRNA upstream 945333 30449745 ~ 30530820 (-) False AMCG00020694
AMCG00020700 mRNA upstream 1218371 30722783 ~ 30737976 (-) False AMCG00020700
TU81300 other downstream 81652 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 690332 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 1158976 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 1257641 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 2237612 27246014 ~ 27249676 (-) True AMCG00020639
TU81316 other upstream 25507 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 1018574 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 1298822 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 2856823 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 3103450 32607862 ~ 32610695 (-) True AMCG00020774

Expression Profile