RNA id: TU81392


Basic Information

Item Value
RNA id TU81392
length 918
lncRNA type sense_over
GC content 0.41
exon number 5
gene id AMCG00020700
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30722783 ~ 30737976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCACTTCCGGCTTTGCGCACCGCAGTGCAGGGTGAAGTAAGTTACAGTGTTGCTAAAATGTTTACAGTCGACCTATTTACTAGTGCGACATGTGCAACGACATAGTTCCGCATTTACGGTTAACATTCAAAATGACCAGAATGTAAAATTGTAACTTTCAGTGCAACAACAGAGTGAGGTCCTGCAACAGAGCGGGTGGTTGTCAGTCAAAGATCAACTCAAATTGACAAACCTACACAAACAGAGCGATCAAACCTTAACTCAGGATGCATTCAGACCTGTCTCCTCACTTGCACACAGAGGAATGCAATGTGCTGATTGCTCAGCTCAAGCAGTGCCACAAGGAGCACAACGTCCTTAAGTTTTTTGGCACTTGTAATGATTTTGATCGGGCCATGCGCGGTTGCTTGAAGAAGGAGTACCAAGAAAAGAGAACCAAGAGCAGAATACACGCACAAGAGATGCAACAAAAACTGAGCCATCCACCCAAACCTATAGAAAGCTAAAGTGTGACTTTCCTTGGGGCTGGTTCTGTCATCAATGGCAGAATTGTTAACATCGATCATAAAGACTCTTGACACACCGTGGAAGCACTGGGCAGTTGGCTGACAGCTGTGGTTGAAAGACTGATTTCTTGTGAAAAGCAGTGTTTAATatcaggaacaaaacaaaaaaaagaacactgaGCATTTACTGAAGAAATGAGAGCAGGTGCCATTCTTTTTCTTGAAGGTCTTTTACTGACAGTTGTCTTTAACAACACAGTTTAAGAATATTTGAGAATTATGAAGTTTTGCTTTGAAAGAATGTACCTGAAGGAAGAAAGAACATGTGCTGTAGTTCTGGGAAACTTACATTTTGGGGGATATGTTTCTGTTCctcttcatttaatttgtttgtaataaagTGATTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81384 lncRNA downstream 28677 30700486 ~ 30702173 (-) True G65073
TU81382 lncRNA downstream 37483 30693148 ~ 30693367 (-) True G65071
TU81379 lncRNA downstream 57888 30672745 ~ 30672962 (-) True G65068
TU81372 lncRNA downstream 113716 30616880 ~ 30617134 (-) True G65061
TU81361 lncRNA downstream 194954 30535292 ~ 30535896 (-) True G65050
TU81427 lncRNA upstream 92246 30830181 ~ 30830542 (-) True G65109
TU81496 lncRNA upstream 414484 31152419 ~ 31156265 (-) True G65166
TU81516 lncRNA upstream 475003 31212938 ~ 31217885 (-) True G65178
TU81517 lncRNA upstream 481608 31219543 ~ 31219744 (-) True G65179
TU81542 lncRNA upstream 652989 31390924 ~ 31412823 (-) True AMCG00020713
AMCG00020694 mRNA downstream 200030 30449745 ~ 30530820 (-) False AMCG00020694
AMCG00020693 mRNA downstream 310216 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020692 mRNA downstream 585323 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020685 mRNA downstream 1197763 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020686 mRNA downstream 1226438 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020699 mRNA upstream 20191 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020702 mRNA upstream 62647 30800582 ~ 30805327 (-) True AMCG00020702
AMCG00020706 mRNA upstream 401758 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020705 mRNA upstream 408152 31146087 ~ 31151972 (-) True AMCG00020705
AMCG00020713 mRNA upstream 627728 31365663 ~ 31403948 (-) False AMCG00020713
TU81356 other downstream 199714 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1197733 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 1325214 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 1933894 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 2402538 28325307 ~ 28328312 (-) False AMCG00020661
TU81423 other upstream 65299 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 1623300 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1869927 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1917199 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 2148429 32886364 ~ 32891493 (-) True G65679

Expression Profile