RNA id: TU81423


Basic Information

Item Value
RNA id TU81423
length 585
RNA type TUCP
GC content 0.49
exon number 5
gene id AMCG00020702
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30800582 ~ 30808846 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGCACATGCTGCTCACATGTAACCCAGGTGAGAAACAACAACACCGAACTGCTTGTGCCAGAGAAAACCACCTGTGTTGTAGAtccaaaagaagaaaacatgaataGCATAATTTCCAGagaaacacagataAAGATCATGGAGTCCACAGTGACCGATGCAGAGAAATACCTGGGCCAGTTCTGCACTGTGCTGGCGTCCTACACTCGCAAGACGGCCAAACTGAGGGACAAGGCTGACCTCCTGGTCAAGCAGCTCATAGACTTTGCCAACACAGAGAACCCAGAGCTCAGGACCTGTCTCAAGAGCTTCGCCGAAGACTTAGCCATGGTGCAGGACTACAGGCAAGCAGAGgtggaaCGGTTAGAAACCAGAGTGGTGGCTCCTCTGAAAGCTTACGGAGATATCATCAAGCACAAACGAGCAGACCTGAAGAAGTTCAGCACCGATCGCAACCGTGAGATTAAAGAAGTGGAGAAGCTGGAGAAAATGAGACAGAAAAACCCCTCAGACAGACAGGGCATTGTATCCTTCCAAACAGACATCTCTCAGTCTCGGTCTGGATTGTCAACTACATATTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81391 lncRNA downstream 65299 30730850 ~ 30737935 (-) False AMCG00020700
TU81392 lncRNA downstream 65299 30730850 ~ 30737935 (-) True AMCG00020700
TU81384 lncRNA downstream 101061 30700486 ~ 30702173 (-) True G65073
TU81382 lncRNA downstream 109867 30693148 ~ 30693367 (-) True G65071
TU81379 lncRNA downstream 130272 30672745 ~ 30672962 (-) True G65068
TU81427 lncRNA upstream 21335 30830181 ~ 30830542 (-) True G65109
TU81496 lncRNA upstream 343573 31152419 ~ 31156265 (-) True G65166
TU81516 lncRNA upstream 404092 31212938 ~ 31217885 (-) True G65178
TU81517 lncRNA upstream 410697 31219543 ~ 31219744 (-) True G65179
TU81542 lncRNA upstream 582078 31390924 ~ 31412823 (-) True AMCG00020713
AMCG00020699 mRNA downstream 43151 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020700 mRNA downstream 65258 30722783 ~ 30737976 (-) False AMCG00020700
AMCG00020694 mRNA downstream 272414 30449745 ~ 30530820 (-) False AMCG00020694
AMCG00020693 mRNA downstream 382600 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020692 mRNA downstream 657707 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020706 mRNA upstream 330847 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020705 mRNA upstream 337241 31146087 ~ 31151972 (-) True AMCG00020705
AMCG00020713 mRNA upstream 556817 31365663 ~ 31403948 (-) False AMCG00020713
AMCG00020711 mRNA upstream 617675 31426521 ~ 31432953 (-) True AMCG00020711
AMCG00020712 mRNA upstream 626782 31435628 ~ 31448649 (-) True AMCG00020712
TU81356 other downstream 272098 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1270117 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 1397598 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2006278 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 2474922 28325307 ~ 28328312 (-) False AMCG00020661
TU81960 other upstream 1552389 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1799016 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1846288 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 2077518 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 2559779 33368625 ~ 33369105 (-) True G65756

Expression Profile