RNA id: AMCG00020704


Basic Information

Item Value
RNA id AMCG00020704
length 3526
RNA type mRNA
GC content 0.63
exon number 14
gene id AMCG00020704
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31109024 ~ 31131389 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCTTCGATTAGCAACGAGTCATCCCCCGTCTCTTCCCCAGCGACCAATCACAGCTCTCCGGTTAGCACCCCCAAACGGGGCCCCATGGGTCCCATCATAGTGCCGCCGGGGGGCCACAGCGTGCCAAGCACCCCCCCTGTGGTCACCATCGCCCCCACCAAGACCGTCAATGGGATGTGGCGGAGTGAGGGTCGGCAGGCAGAGTCTGGGCCACGTGGAAGCAGTCGGGATCGTCTGGGTGGTGAGTCGGCCCAGGAGAAAGGCGGCCCCTCCGTCCCCCCACACCTCATCGGTAACCCCTACACCTTCAGCCTCGCCCCCGGCTCTGTGGTGCACCACGTGGTCCCTCCAGCCAGCGTCCCCGAGGACTACCTGCGCAGCTTCAGACCCTATCCCACCGCCGAGGACCTGCGGATGCCATCGCTGCCGCCCCTGGGCCTGGACCCAACTACAGCCGCAGCCTACTACCACTCCACCTACCTTCCCCACCCTTCCTTCTCTGCTTACAGAATGGACGACTCTTTCTGCTTGTCCCCCATGAGGTCTCCCTTCTACCCCCTGGGAACGGCGGGCACCCTGCCCTCTCTGCACCACTCGGCCGTTCACATGCACCTGCCCGGGGTGAGGTACCCAGCTGAGCTGTCGCACTCCTCGATCTCCGCACTGCAGTCCGAGCGCCTTTCCGAGAGGCTGCAAATGGAAGATGAACTGAGGCAACgagagcgggagagggagagggagagagagagggagcgtgagaaggagagggagcGGGAGGCTGAGCGGGAGAAGGAACgggagcgggagagggagcGTGAACGTGAGCGCGAGAGGGAGCTGGAGCGCGAgcgggagaaggagagagagcgggagcGGGAGGCggagagacagaaggagagagcaagagagaaggAGCTGCAGGCCTCCAAAGCCATGGAGAACCACTACCTGGCAGACCTACACGCCCTCAGGGCCCAGCCAGCTGAGGACCGGGCCAAAGCCGGGGAGAGACTGACCCCCAACAGGCCGGaaaaaaccAAAGAGCCAGCTCTCCCCGCACCCAAGCCAGTCCCACCAGGTCTGCTCCCCTCCCCTGCGTCCTCGACCCACCTCGCCGTGCCCGGCCTCATCCCTACCCATGGATCTTTCTTGGGGCCGGCTGGCACGGCTGGGCTGGGGGTCGGGGTGGGCAGCTCTGCCCAGGGGACCCTGGCAGCGGCATTGCTCCTGCAGCGCAACAACGAGGAGGAGAAATGGTTGGCGCGGCAGAGGAAGCTGCGGCAGGAGAAGGAGGACCGGCAATTCCAGGTGTCTGAGTTCAGACAGCAGGTCCTGGAGCAGCACCTGGACATCGGCCGGCCCGGGGAGGGAGACCTCCGGGGGGAGGGCCACAGGCCCATCCCAAACCACCACGAGCCGGGGGGCAGAGATTTGCTTCCACACTTGGGGGGGCCACCACCCCTGATCTCCCCCAAATCTCAGCACCGCGAACAcggccccccaccccccaccaccctgtgGAACCCAGCCTCGCTCATTGACACGGTCTCCGAGCGGCGCAGCCATGAGCCGTCCCTGCCCTCCAGCCACTACGAGGCCAGCCGGCAGGTCCAGGCATTGGGCAAGGGCGAGCGCCACTACGGCTCCGAGAAGCTGGAGGAGAGCGGCAAGAGGAAAGAGTCTCTGGAGAAGTACCCCTCCCTCAGAGGAACCAGCTTCCTGGAGCCCAGCACGTTCCTGGCCGAGCTGGAGAAATCCACACAGTCCTTTCTCAACCAGCAGAGGGCATCCTTGTCCCTGCCCAGCCAGTATGGGGACCTGAGTGCCCCCCACAAGGCCAGCTCCCCCTACAGAAGTATGCATGCACCCCCCCGGGGGCCGGACCCAATGCTGGTGTACGACGACTTCCTGCAGCAGCACAGGCGGCTGGTCAGCAAGCTGGACCTGGAGGAGAGGAGGCGGCGAGAGGCCCGGGAGAAAGGCTATTACTACGATCTGGACGACTCGTACGACGAGAGCGACGAGGAGGAGGTGCGAGCCCACCTGCGCCGCGTCGCCGAGCAACCGCCACTCAAGCTGGACGACTCGTCGGAGAAGACGGACTTCCTGCGTGTGTTCGGGTTGACCACTCGGGCCCGCCGCGACGAACTGCTGCtgcagaagaggaggaagaggcgGAGGATGCTGAGGGAACGCAGCCCCTCTCCACCGGCCGTCCAGAGCAAACGACAgaccccaccaccacctcccctCAGCACCCGCTACACCGCCGAGCAGATGAACTGCACCCCCGAGTTAGAGGACAAGAAGAAGTTCCTCACCATGTTCAGCCTGTCCCACGtggtggagctgctgcaggcTATCAAGCAGAAGAGTGTGACCCTGGAAAACATCAGACACCCCCTTCAGCCCCTGTGCAAGAGTCCTGCTGCCCCCCACACAACAGACACGACTGCAGGCCACCCTCCCGCTGACTCGGAACGGCCGCCAAGCGTCCGGCCGCCAACCCCCTGCCCTCCCGACTCACAGAAGGTTGTGGAGTCCAGCCGGCCGGAGCAGCTAAAGCCCTCAGAAGCACTGAGACCAAAAGATGACCCCCGGGCTCCCTTCCATAGTGGGGACAAGGCCAGGCTAGGCGAGGGCCATTTGGCCAAGAAGAACCCCAGCTTACTCAACAGCATGCGGCCCCCACAGCCCCCCAAGGATGGCCCCCACAGCCTGAATGGAAAGACCAAACCCTGGGAGAGTTTCACTCCGGAAGAGTTTGCCCAGCAGTTTCATGAGTCAGTGCTGCAGTCTACCCAGAAGGcactacagaaacacaaagggtGTGCGACAGGGATAACAGAGACGAACCACAAGCTGGACTCGTCGGTGCACTACAACATTCCAGAGCTGCAGGGCCAGTCCCGGCTGGCCGTCCCCCAGCCCAACGGACAGCACTGCCCCCTGCCGCCCCGTCGAGACGTCCAGGCCATGCGGGAGGAGGCCTCGGGGAACGAGGACGAGGAGGACGAAGACTCGGAGGAGGAATACGAGGAGGAGGCTCCGGCTCCAAGTATTGAGCGGCAGGTGCTACAGAGCCAGTGCCGGAGGCTGGAGGCCCATCACTATAATCTGACTGTGACTGCGGAACAGCTCTCACACAGCATGGGGGAGCTGGTGGCCCAGAAACAGAAGCTGGCATCCGAGCGAGAGAAGCTGCAGGCGGAGCTGGACCACTTACGAAAGTGCCTTGCGTTTCCACAGATGCACTGGTCTAGGGGTTACTTCAAGGGCTACCCCCCGAGGTGACATCCCTACTCCCCAGCTCCCGACCTCCCCCGGCCCCCACAGTAGCAAAAGAGAGTCTATTTTATTACTTGGATTATTTAAAAGACTTGTCTCCACAAAGAAGGATGGAAGCTCCAGTAAGCCACGAATGTGCCATGCGTTAGAAAGCCTAATCCGCCGCGTCTGATGTCAGTAGTGCAGGAGGGGCAGGCCGTCGAGCCCCTGGCTGTGGGGGTGGCCTTTTTGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81378 lncRNA upstream 406867 30700454 ~ 30702157 (+) True G65067
TU81377 lncRNA upstream 408770 30696959 ~ 30700254 (+) False AMCG00020695
TU81374 lncRNA upstream 459660 30648824 ~ 30649364 (+) True G65063
TU81357 lncRNA upstream 572460 30533193 ~ 30536564 (+) True AMCG00020697
TU81333 lncRNA upstream 1120965 29986565 ~ 29988059 (+) False G65024
TU81491 lncRNA downstream 14698 31146087 ~ 31149761 (+) True G65163
TU81557 lncRNA downstream 352103 31483492 ~ 31484470 (+) False AMCG00020715
TU81558 lncRNA downstream 352103 31483492 ~ 31483922 (+) False AMCG00020715
TU81570 lncRNA downstream 354194 31485583 ~ 31485902 (+) True G65223
TU81596 lncRNA downstream 433444 31564833 ~ 31566359 (+) True G65246
AMCG00020703 mRNA upstream 270993 30835572 ~ 30838031 (+) True AMCG00020703
AMCG00020701 mRNA upstream 305507 30761959 ~ 30803517 (+) True AMCG00020701
AMCG00020696 mRNA upstream 352705 30747838 ~ 30756319 (+) True AMCG00020696
AMCG00020698 mRNA upstream 362437 30740123 ~ 30746587 (+) True AMCG00020698
AMCG00020695 mRNA upstream 409088 30686706 ~ 30699936 (+) True AMCG00020695
AMCG00020707 mRNA downstream 21012 31152401 ~ 31155839 (+) True AMCG00020707
AMCG00020708 mRNA downstream 70561 31201950 ~ 31215519 (+) False AMCG00020708
AMCG00020709 mRNA downstream 95733 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020710 mRNA downstream 282136 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020715 mRNA downstream 328925 31460314 ~ 31483706 (+) False AMCG00020715
TU81412 other upstream 338097 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 1533678 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 1643312 29464564 ~ 29465712 (+) True G64979
TU81182 other upstream 2099423 29008663 ~ 29009601 (+) True G64908
TU81160 other upstream 2234952 28873630 ~ 28874072 (+) True G64887
TU81504 other downstream 31212 31162601 ~ 31217840 (+) True AMCG00020708
TU81555 other downstream 328113 31459502 ~ 31484470 (+) True AMCG00020715
TU81717 other downstream 731994 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 962635 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 1055225 32186614 ~ 32189381 (+) True G65433

Expression Profile