RNA id: TU81504


Basic Information

Item Value
RNA id TU81504
length 3258
RNA type TUCP
GC content 0.41
exon number 8
gene id AMCG00020708
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31162601 ~ 31217840 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCGGAAGAGGTGCTGCTCCAGTGCACGGCAGTGTCCGACACCTCTCCGAGCGGCCACAGGGACACGCAGCAGCGCCCCGCCGTGTGATACGCACTTGTGATCCTACAGGCGTGTTTTCGTGGCGACCCACAAATCGGTTAATCCGGCCAAACACGTGTGGTTGTGTGTAGGGCGGCACAGTCCCGGGGAGCCCGGTCCCTCCACAGACACGTGTCGGCGGTGGTCGCAGCCATGGGGACCCGGATGAGTAAGATAGTAGATGGCCTGTATCTTGGAAATATAAGGGATTCTGAAGACCGTGACAGTTTGGCCAGAAATGGGATTACGCAAATTCTGTCTGTTTACAACAACGCCAGACCTGTGATGGAGGACATGACCTATCTTTGTATACAAGCAGCAGATTCTTCTAACCAGAACTTTGGTCCTCTACAGAGACGTTGCCGTCGAGATAGTGAAGAAATTAAGTGTTGAAGTAAAATTTGATACAGCATTTCAAGGAGTGCATTAGTTTTATCCACGAGAGCAGACTGAGTGGAGGTGCTTGCCTTGTTCACTGCCTGGCCGGGGTGTCTCGCAGCACCACAGTAGTGGTGGCCTACCTCATGACGGTGACCAACTACAGCTGGGAAGAGTGTCTGTCTGCAGTGAAGGCGGTGCGTTCCTTCGTTGGGCCCAACTTTGGTTTCCAGCAGCAGCTACAGGAATTTCAGATGACCATGGTGtctgagTTCCGCAGCTGGCTGAGGGCCAAGTACAGACACAGCCCCTTCGACGACCAGGCCGAGGTGTGGAAGCTGCTGAGGTGCTTcgaggagcagcagcagcagcagagactGAGGAATGGAGACCAAGGCTGGATGAACCAGGCCACCAGCGTCTACCCGTTGCCTTACAATGCCTACGGCACCAGTGGCAGCAGGTGGATCAACAGATAAGGAGTAGCTGTGTTGGACCTGCAGCGAGATACAGAGGTGTCTCACCATTGACTAAGCCTGCTGTCAGAGTGCTGCCAAGGTTCAGCTCAAACAGAAGGCCCAGTCTGCTTGTGATGCTTCATTATCACCATCTCTGCAGCCTGTTTCTCTGTAGTAGTTCTGTTATAAGGGTCAACCAGATGCCATTATAACCGTTAtttaaataagatgtttttGGATTTATCCTTGCTCTCATGCGATACCGTTTTGGATGCATTGCACAACACTGAATCAAGGAGGAAGGCAAGTGTCCAGCACAGGCCAATTATAggtcaaataaacacattgtgaGAACACACAGATGACATTGATTATTATAAAcccatcattttaattaatcaacccctccccctcccagcTACTCCACTCAAAAACTCAAGACTGTCATTCTTCAGCACTGCAGGGGCATCTTAACTGCAGGAACTGAGAATTGAGGGTTTGCCTCTTGGACATTATagctgcatttaaacaaaatttttttttttgcatattcaGTCTTGGTTTCATAGTAGTTTCACATGAAGTAAATTCTCTTAAAACTCAAATCAACAGGTTACAGGAAATTGACACTATAACAAAATGAGTGTGCAGTGGATTAATCACTTTTATTATCAATTACAAAGTGCCTGGAGTgttatctgtttcttttttccagcAGCTTTATGACAATCAAGTagagaacacacagtgcataaACTGAGGgcagttgttttaataaacatattgcTGTATCAAAGCATAACTACAAAATAACTCAAATGACAACTTAACATAACTCAAAATACCAAAAGACAACTTCATTTGAAGCAGTGGGTAGTTAATTCAATGCCCAGCTAACTTTTTCTAAATAGTTATTTCAATTGTAAATATCCATATAAACATGCTGAGCAAGTATAATTTCTGAGGTATGTAGTTCACCACTATACCGTGTACTAATttacaattgtgttttattttacttggcttttttctctcttaacaGTAACTCCATTTGTATGAGGTGTGTGTTGACTATCACATGGTAATGTTAAACAATGCAGATGTGTATATGATGTGCtgtatttttgtgaaaaattAAGTACATTAACAGAGGTGAAAAACGGATTAAGATGAGCAGGTTTGCCACTGTAATTGAGCCATCTTTGGTTTTGTCAGGTTCTTATCGATTAATTCCTAATCTAAACAGTATGCGATGAATGTGGTCTCTCGATCTTTAGTGACGAGGGGACACTGGGACAGGACAGATGATGCGTACAGGCTGTTGGAGTAGAAGAAAGGGAACGGCAATAGAAGTTCTCTAAAGCTGATGGACTTAATGAAgaagtcacacacacaatacagtcatattttcagtttttatcttTGTAAGTGGTGGTCATAAATGTTGTGGCCGCTTGGATATCTTCTTGCAATACTACTAAGAATGGAGAAACCATTTAAAGCATACATatcttaaataatttaaatacaaataaactgtatgATAGATTGCCAGCAAAACATATCCAAGTGCATTATTTCAGATGGTTCAGAAATGTTCTTAATTAGTAGTTCAtgaaaatattagttttatttcagtaaGACTTCTAAGTGAACTCAAGAACTTCCAGTGTTTATTAAGCTAACAGCCCATCAACCTATTTCACTCCAGACACTGATGAGGGCACCAGCTGGGTACACACCCATGTTTTTACACAACGTTTGAGAAGATGAATGAAGGTTTGTAAGATCTCAAACTGAAATTTGTCATTTTCCTCTAGGAGCAGCAGGCAGTCCTCCAATATCATTTAAGACTTTGTAAtaaataggttttattttaaaagcaaatataacTTTTTCAGAGAACTGATATTTCAGACTGCAAATGTTCTTTgttgtatatatgcatttttactgtagagaaatattttattagaaacaaatatatatataataaaaatattgctGTCTAAGACCATTTTCCTTGCCTTTAGTTTAAAATGGACTGATTATTACTTAAGCAAATGTACTTTAATTGCTGTGTGTTgtgattattatcattgttgtagtagttgtatttaaaaagatcAAAACTATCATTTTTAGAACTGGGAACTCACAACATTGCCTTCTAAAggtcatgcatttaaaattagtAGAACTAGGAACTGgtgtttcttagcagacaatGGGATGTTTGGAGATATTTTAGTTCTTTGGTGTTATTTCTTttagaatgtgttttgtgtaattgtgtgtggtGTCATAAATCTTTGGATATTGAAGGCTAAATAAAATGGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81491 lncRNA upstream 12840 31146087 ~ 31149761 (+) True G65163
TU81378 lncRNA upstream 460444 30700454 ~ 30702157 (+) True G65067
TU81377 lncRNA upstream 462347 30696959 ~ 30700254 (+) False AMCG00020695
TU81374 lncRNA upstream 513237 30648824 ~ 30649364 (+) True G65063
TU81357 lncRNA upstream 626037 30533193 ~ 30536564 (+) True AMCG00020697
TU81557 lncRNA downstream 265652 31483492 ~ 31484470 (+) False AMCG00020715
TU81558 lncRNA downstream 265652 31483492 ~ 31483922 (+) False AMCG00020715
TU81570 lncRNA downstream 267743 31485583 ~ 31485902 (+) True G65223
TU81596 lncRNA downstream 346993 31564833 ~ 31566359 (+) True G65246
TU81619 lncRNA downstream 417923 31635763 ~ 31636329 (+) True G65266
AMCG00020707 mRNA upstream 6762 31152401 ~ 31155839 (+) True AMCG00020707
AMCG00020704 mRNA upstream 31212 31109024 ~ 31131389 (+) True AMCG00020704
AMCG00020703 mRNA upstream 324570 30835572 ~ 30838031 (+) True AMCG00020703
AMCG00020701 mRNA upstream 359084 30761959 ~ 30803517 (+) True AMCG00020701
AMCG00020696 mRNA upstream 406282 30747838 ~ 30756319 (+) True AMCG00020696
AMCG00020709 mRNA downstream 9282 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020710 mRNA downstream 195685 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020715 mRNA downstream 242474 31460314 ~ 31483706 (+) False AMCG00020715
AMCG00020714 mRNA downstream 278204 31496044 ~ 31503954 (+) True AMCG00020714
AMCG00020722 mRNA downstream 467289 31685129 ~ 31709788 (+) True AMCG00020722
TU81412 other upstream 391674 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 1587255 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 1696889 29464564 ~ 29465712 (+) True G64979
TU81182 other upstream 2153000 29008663 ~ 29009601 (+) True G64908
TU81160 other upstream 2288529 28873630 ~ 28874072 (+) True G64887
TU81555 other downstream 241662 31459502 ~ 31484470 (+) True AMCG00020715
TU81717 other downstream 645543 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 876184 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 968774 32186614 ~ 32189381 (+) True G65433
TU81856 other downstream 1056446 32274286 ~ 32278972 (+) False AMCG00020748

Expression Profile