RNA id: AMCG00020711


Basic Information

Item Value
RNA id AMCG00020711
length 2460
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00020711
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31426521 ~ 31432953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCCCAGCCTGTGcaatgaatgtgtttattgatgCCTAACATTGTAACACACGCTGTTATCACCATATCATTAGAAGTCCATTTGTAagactttattgtatttattagtaaTTCGTAGCCAGCATATTTAtagtgtattatatttgtacaaAGTAGCATCCAGTTTCCTAGGCGGCCACTATAAAACTTTGGGAATGGAACCTGCTATCAAGTTAAATCCTGGCTGTACGAAATGGGATATTCGGCAGAAAGTCTGGGATTACATTGAAGCCAACAATCTGGCCAATTTCCCCAGACCGGTTCACCACAGAATACCCAACTTCAAGGGAGCCGCACAAGCAGGGGGAAAGCTGGCAACTTTACCGGAGTTCAGGTCCTCTAGTGTTGTCAAAGTGAACCCAGACAAGCCCCAGGAGCAGGCTCGCTTTATTACCCTGGACGGGGCCTATGCGGCTTGTGAACACGTCACAAACCTGGAGGTGTTCCAGAATGCGAAAGAGGTCAAAGTGGACCCCGACAAACCGCTAGAGGGAGCTCGCCTGGCTGCCCTGCAGgcaAGAAAAACATTGCTGGTCCCCACCCCACGCCTCAGGACTGGGCTGTTCAATAAGATTGTCCCACCTCAGGGAGCCACAAAGGAGGAACTGCGTATCTGCTCCACATCCCGGGGTGTTAAGGAGTATAGTGTGCCCATTGGTTTGGACGCTTCGGTGCATGTTGACCTGGTTGTGGTGGGGTCCGTGGCAGTGTCTGAGAAAGGCTATCGCATAGGAAAAGGAGAAGGCTTTGCAGATCTAGAGTATGCCATGATGGTGGCAATGGGAGCTGTGACAGACTCTACAATCATTGTTACTATTGTCCATGACTGTCAGATTGTTAATATTCCAGAGGAGCTTATTGAAAGTCACGATCTCACAGTGGATTACATCCTCACGCCAACTAGAGTGATTAAAACTGACTGCACATGCCCAAAACCACAGGGGATTTTGTGGACTAAGTGTGATGTGGACACACTGGAGAAGATCCCCATTCTGAAAAAACTCTGCCGTATGGAAGAAGAGGCAGGGAAAGATGTGGCTTTGAAGAAGGAGCTCCCTAGAGGTGACCCTAGCCAGGCTGCAGCAAGGGAGCCTGGGAAGCGGGATGGGGAGCCAGAGAGGGGCGGTGGGAGTGTCCCGGCCTCAGTGTCAGAAGTCCCCAGACAGGGCCGGATCACTACGGTTTACATGGGTGGCATTCCCGCCGGCCTGCGGGTGAGTGAGCTGAAAGGTGTGCTAAGAGAGCGGGGAGCCCTGCCCTTACGCCTGAACTGGCAGGGGGCACAGCACAGGGCCTTCCTGGATTACACCGACCTTCATAGTGCAGAGGAGGCCCTGGCAGCTCTGCAGGGGCTCATCCTCAGTGGCAACAGTGTCTGTGCTGAGCTGGCCAGGAGTCAGAGGGGTGACAGGAACGCAGGCCGGGCTCCCAGGAGACCCAAGGTGACCAAAGCTGCAGAGAGTGGAGCCCAAGACCAGAGCGCTCCATAAACCCACTGCTTTGCTAGATGTTCTTGACTCGATAGTTGGCCTGTGTGAAAGAGGACCCTTCTGTTCTTCATTGCTTTGCTGAAGATGTTGTACTCTTGATGATCACTTGTTGTATAATTTGGTAATAGAACATGGTGACAAATAAGGCATGTGTTGACTAGGAAACACGAGCAATGaggaaagttttatttttgtaggaaCTGGTATTATCTTTGaaacagatttgtattaatatatatagcacattattcttatttagcagacacccttttcTAAGGCAGCTTACATGGTTCAACAATCACTAGCATACAATGTTACACACGCACCATAATACCAATGCGTCTATCACTATATAAAATCATCATTACAGTGAATCACATTATGGTATTAGAGAATATTAAAATGGTCTAATCTCAACAGCTGTGGCAGGAGGTTAGACATTGTGCAGTTCTGATGTTCATGGCAACTCATTTTGTCATAAATGAATGGTCCTCTAAGTGAACTGTGAGCACTGCCAGTATCTCCATGCTTTACAAGGGTTATTATATTCAACGTAtaagaataattaaacaatcatcAGCTcttcattactttttaaacacTGAAGACATTTAATCAATTATATCCTGGTCAATTATACTGACAAGACGCAGAAGTGTTTCAAGGTTCTACTTAAATTGTGTAACAGATTCAGTTCAACTTGctttacacaaatatacatatgatTAATGCAAAACACCTGTAAGTGCAGTACATACCACAGCCCAAAGTACCAAATCTAAATGCTGAAACAAGGTGTGCTCcactgatttcattttaaaaccaaaaatgcccaataaaaagcagaagaacccacacatgcaaatgtattccatgtcaagtttttttacattgtgcaatgtttttatttaaaatcatagcTCATTGTGG

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K24991 MTHFSD; methenyltetrahydrofolate synthase domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81542 lncRNA downstream 13698 31390924 ~ 31412823 (-) True AMCG00020713
TU81517 lncRNA downstream 206777 31219543 ~ 31219744 (-) True G65179
TU81516 lncRNA downstream 208636 31212938 ~ 31217885 (-) True G65178
TU81496 lncRNA downstream 270256 31152419 ~ 31156265 (-) True G65166
TU81427 lncRNA downstream 595979 30830181 ~ 30830542 (-) True G65109
TU81567 lncRNA upstream 47803 31480756 ~ 31481969 (-) True G65221
TU81620 lncRNA upstream 215671 31648624 ~ 31648851 (-) True G65267
TU81656 lncRNA upstream 278581 31711534 ~ 31711764 (-) True G65297
TU81681 lncRNA upstream 323309 31756262 ~ 31756689 (-) True G65314
TU81682 lncRNA upstream 324498 31757451 ~ 31758500 (-) True G65315
AMCG00020713 mRNA downstream 22573 31365663 ~ 31403948 (-) False AMCG00020713
AMCG00020705 mRNA downstream 274549 31146087 ~ 31151972 (-) True AMCG00020705
AMCG00020706 mRNA downstream 283118 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020702 mRNA downstream 621194 30800582 ~ 30805327 (-) True AMCG00020702
AMCG00020699 mRNA downstream 666438 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020712 mRNA upstream 2675 31435628 ~ 31448649 (-) True AMCG00020712
AMCG00020717 mRNA upstream 86272 31519225 ~ 31543659 (-) True AMCG00020717
AMCG00020716 mRNA upstream 111615 31544568 ~ 31545686 (-) True AMCG00020716
AMCG00020719 mRNA upstream 113420 31546373 ~ 31560989 (-) True AMCG00020719
AMCG00020718 mRNA upstream 131880 31564833 ~ 31573696 (-) True AMCG00020718
TU81423 other downstream 617675 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 895385 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1893404 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2020885 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2629565 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 928282 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1174909 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1222181 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1453411 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1935672 33368625 ~ 33369105 (-) True G65756

Expression Profile