RNA id: TU81558



Basic Information


Item Value
RNA id TU81558
length 321
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00020715
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31459502 ~ 31484470 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aggtTTACAAACAGAAGGTGAAACACTTACTATACGAACATCAGAATAGCATCTCGGAGCTGAAAGCTGAGGGGGTTGTGTCTATGAAGCTGAGTCAGAAGGAGCAGATTGAGAAGGAGGCAGAGTTACACAAGGGTGTGCGTACCCTGAAAGTGGACCTCAAAGAGCAGGAGCTTTCAAATGAGAATCTAGTGAAGAGCTTGAAACTGAAACACGATGAAGAAATCACCAAATTACGGATTGATTTTGAAAGACAAGTACGAGGTATGAGTTGATATTTGAGTTTAATAGGATCATTAGTCTTTGCACCTGATATTGCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81491 lncRNA upstream 333731 31146087 ~ 31149761 (+) True G65163
TU81378 lncRNA upstream 781335 30700454 ~ 30702157 (+) True G65067
TU81377 lncRNA upstream 783238 30696959 ~ 30700254 (+) False AMCG00020695
TU81374 lncRNA upstream 834128 30648824 ~ 30649364 (+) True G65063
TU81357 lncRNA upstream 946928 30533193 ~ 30536564 (+) True AMCG00020697
TU81570 lncRNA downstream 1661 31485583 ~ 31485902 (+) True G65223
TU81596 lncRNA downstream 80911 31564833 ~ 31566359 (+) True G65246
TU81619 lncRNA downstream 151841 31635763 ~ 31636329 (+) True G65266
TU81623 lncRNA downstream 173804 31657726 ~ 31659455 (+) True G65270
TU81629 lncRNA downstream 198192 31682114 ~ 31683154 (+) True G65276
AMCG00020710 mRNA upstream 64137 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020709 mRNA upstream 249868 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020708 mRNA upstream 267973 31201950 ~ 31215519 (+) False AMCG00020708
AMCG00020707 mRNA upstream 327653 31152401 ~ 31155839 (+) True AMCG00020707
AMCG00020704 mRNA upstream 352103 31109024 ~ 31131389 (+) True AMCG00020704
AMCG00020714 mRNA downstream 12122 31496044 ~ 31503954 (+) True AMCG00020714
AMCG00020722 mRNA downstream 201207 31685129 ~ 31709788 (+) True AMCG00020722
AMCG00020723 mRNA downstream 229974 31713896 ~ 31720373 (+) True AMCG00020723
AMCG00020724 mRNA downstream 236940 31720862 ~ 31723055 (+) True AMCG00020724
AMCG00020729 mRNA downstream 242262 31726184 ~ 31753719 (+) True AMCG00020729
TU81504 other upstream 265652 31162601 ~ 31217840 (+) True AMCG00020708
TU81412 other upstream 712565 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 1908146 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 2017780 29464564 ~ 29465712 (+) True G64979
TU81182 other upstream 2473891 29008663 ~ 29009601 (+) True G64908
TU81717 other downstream 379461 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 610102 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 702692 32186614 ~ 32189381 (+) True G65433
TU81856 other downstream 790364 32274286 ~ 32278972 (+) False AMCG00020748
TU82011 other downstream 1108560 32592482 ~ 32594454 (+) True G65590

Expression Profile