RNA id: AMCG00020716


Basic Information

Item Value
RNA id AMCG00020716
length 440
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00020716
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31544568 ~ 31545686 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGAATCAGGCAAATGATGGGTGAGCCACCACACTTACCCCGTACCTACACTGTGACATTGAGTGTGTTTCGCGTTGCTTGTGAACGGTCTCTGGGAAGACAGGAGCGACGTGACAAGCGGAGCAGCACCGGGAGAATGGCTCACATGCTGGGTCTCCTCTCGGCGGCTGCGGGGCCCCTGGGGCTCGGACTGCGGAGCTGGGGGTCCAGCCGAGCGGTACTCACATCTGGGGTACTGTCCGCGCTGGGCTTCCGCAACACCGGTGTCAGGAGCTTTGTGCTACACAGAATAAAGCAGGGTGTATCTGGGGAACAAGCATCATTGACCCAGCTGCTCTGTTCTAAGCCGCCGAAAGgtTTTGAAAAATACTTTCAGAAGAATGGAAAAGCATCTGAACCAAAGACAGCAGCTGGAGAATCAAAAGGTAatattaaggaa

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81567 lncRNA downstream 62599 31480756 ~ 31481969 (-) True G65221
TU81542 lncRNA downstream 131745 31390924 ~ 31412823 (-) True AMCG00020713
TU81517 lncRNA downstream 324824 31219543 ~ 31219744 (-) True G65179
TU81516 lncRNA downstream 326683 31212938 ~ 31217885 (-) True G65178
TU81496 lncRNA downstream 388303 31152419 ~ 31156265 (-) True G65166
TU81620 lncRNA upstream 102938 31648624 ~ 31648851 (-) True G65267
TU81656 lncRNA upstream 165848 31711534 ~ 31711764 (-) True G65297
TU81681 lncRNA upstream 210576 31756262 ~ 31756689 (-) True G65314
TU81682 lncRNA upstream 211765 31757451 ~ 31758500 (-) True G65315
TU81708 lncRNA upstream 239829 31785515 ~ 31803792 (-) True G65337
AMCG00020717 mRNA downstream 909 31519225 ~ 31543659 (-) True AMCG00020717
AMCG00020712 mRNA downstream 95919 31435628 ~ 31448649 (-) True AMCG00020712
AMCG00020711 mRNA downstream 111615 31426521 ~ 31432953 (-) True AMCG00020711
AMCG00020713 mRNA downstream 140620 31365663 ~ 31403948 (-) False AMCG00020713
AMCG00020705 mRNA downstream 392596 31146087 ~ 31151972 (-) True AMCG00020705
AMCG00020719 mRNA upstream 687 31546373 ~ 31560989 (-) True AMCG00020719
AMCG00020718 mRNA upstream 19147 31564833 ~ 31573696 (-) True AMCG00020718
AMCG00020721 mRNA upstream 48542 31594228 ~ 31594905 (-) True AMCG00020721
AMCG00020720 mRNA upstream 60602 31606288 ~ 31632057 (-) True AMCG00020720
AMCG00020726 mRNA upstream 116951 31662637 ~ 31670494 (-) True AMCG00020726
TU81423 other downstream 735722 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1013432 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2011451 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2138932 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2747612 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 815549 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1062176 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1109448 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1340678 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1822939 33368625 ~ 33369105 (-) True G65756

Expression Profile