RNA id: AMCG00020719


Basic Information

Item Value
RNA id AMCG00020719
length 3332
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00020719
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31546373 ~ 31560989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTACACAAATAATGCTATAATAACGCAGCCTGCACCATAGAAGCGCCAGCCACACGGTTGTGTCTTCGATGCCTGGGACCGAAATATAGTGTCGTTCACCCGCGTTTACCCGCACGGATCCGCCCCGGAGACACTGTTTCCCCCCGAACCGCAGCGCTGCCGGCCTGGATGTGCGGGGGGTGAGATGTAGCTGATGCTATGGAATATGATGAGAGACTCGCCCGCTTTCGCCAAGGCCATCTCAACCCCTTCAACAGAGAGGAAGGGGGCGGCACAGAGGACAGGGAGCCCCCACAGCATGAGGTGAAGCCGGAGATGTTCTCATCAGACACCAAGATCCCCAGCACAGACAGAGTCATGGACTTGGGGCTGGCTGAGGACCACTTCTCTCGGCCCATGGACTCGTTCGTGGCGTCGGACATCGAGCAGCTGAAGCAGGCCATCGAGGAGTGCAAGCAGCTGATCCTGGAGCTGCCCGAGCACTCGGAGAAACAGAAGGACACCGTGGTCAGACTCATACACCTCCGCCTCAAACTGCAGGAGCTCAAGGACCCAGAGGAAGACGAGCCGAACCTTAGGGTTTTACTGGAGCACCGCTTCTCCAAGGAGAAGAGCAAGAGCGTGAAGCAGACCTGTGACAAGTGCAGTGCCATTATCTGGGGGCTCATCCAAACCTGGTACACCTGCACAGGGTGTTACTACCGCTGCCACAGCAAATGCCTGAACCTCATCACCAAGCCATGCGTGAGGTCAAAGATCAGCCACCAGTCGGAATACGAGCTGAACATCTGTCCTGAGATCGGCCTTGACCGGCAGGATTACAGGTGTGCGGAGTGTCGGACACCTGTGTCACTGAGGGGCGTCCCGAGTGAGGCCAGGCAATGTGACTACACGGGCCTGTACTACTGCAGCAACTGCCACTGGAATGACAGCGCCACCATCCCCGCCCGCGTCATCCACAACTGGGAGTTCGAGCCCAGGAAGGTGTGCCGCTCCTCCATGCGATACTTGGCGCTGATGATTTCTCGGCCGGTGCTGAAGCTCAGAGAGATCAACCCACTGCTCTTCAACTTTGTGGAGGAACTGGTAGAGATCCGGAAACTGCGCCAGGACATCTTATGCATGAAGCCCTACTTTATCACCTGTAAGGAGGCTATGGAGGCCAGGCTCCTGCTGCAGCTGCAGGAACGGCAGCACTTTGTGGAGAACAATGACATGTACTCCCTACAGGACCTCATTGATATCTCTTCTGGCCGTCTCAGCTGCTCCTTGACCGAGATCCACACCACCTTCGCCAAACACATTAAACTGGACTGTGAGAGGTGCCAGGCTAAAGGCTTTGTGTGTGAGCTGTGTAAAAAAGGAGACGTGCTGTTCCCTTTCGACAGCCACACCTCGGTGTGCCATGAATGCTCGGCTGTGTTTCACAGGGACTGTTACTACGACAACTCCACTTCTTGTCCGCGATGCACCCGCATGACAGAGAGGAAGCAGTCCATAGAGCCACCCACTTCCCAGGAGAATTAATCTTTGACCCCCTCCCTGTGGCCTGCATTCTGTGTCCATACTTCTTTCTGACACCCTCAGTTTATGAACTCTGTATGGTCCTGATTTGAGGTTTATCCCGCACTTTTAGCAAGAGGTGGCATTACGACACACACTGGCTCTCAACAACCTGAACCTTTTTAATTCTCATATTGTTTTGATTCCACCACCTTCTCTTCAGACATTGGGTCTGCTAACAGTTTCAGAGCACATAGCAGATCAGCTGTTTCTCTTGGAATGTTGATGGACTTACAAGGAAGAGAAAATGGGACACTAACTGGTAATTTGAGTCCACACTGTGCACTGAAGGAAACCTGAGCACTAATCAAAGACATCCTACCTTCACTTCAGCTGTATCCTAAACTGAAATTCCAGTGGAAACCTGTAAACACCCTGCCTGAGCAGATCTCTACAGAGCAGCCCACACAGGAGATTAGTGTGACTGCTGTAAAAAACACAACCTGTTTACATCGAGGAAAACAGGTGTAACTCGCCAATGAATCTAAAAGATTTAACTGCCATTCACTACTCCTGTCTCTTGTTATTCACACTATTGAATTCACAGTAATTTAAATCCTTGTTTCTTGGTATGCAACTACAGAGGAGGTTTAAACCACAGTGATGGTTTTCTTGAGTAAAGTTATGTTtacaataagtaaaaaaaaaaattaaatgcatgaaaacaatCTAGAATTGttaatatccttttttttttagaactcGTGAAGAACAAACCATTTCTTAAAATGCTGCTAATTAAATTCTTAAATTCTACAAATGAGCAGCAAACTTTTTTTATACCATCAGCTGATTTACcaattttgcatacattttactAATTGTGTGTGGGAGTTGTATCATACCGTACACCATGGTACATGGTTACAATTTGTATTAACTTTTAATATCAGTGATGGCATCATGGGTGGAAATTCTCATTGTCTTATTAACAGAACTCTGGGAAACAGTATATCATATCTCAAAGActtaaaggaaattattaaatgtgGGAAGGcaaatgtttagaaaaatatacagtgcattCATTAAACTGTATGCTATATAATCAGAACAACAGTATAGATCTTAGAAGCTGTTATACAAattttcataaacaaatattgtaatgcAGTGTAGAGCAGGATTTCCATCTCTGGACCTGAAAAATCCATTAGGTTGTAGGTGACTTAAGCCAGTAGGAAGAGATCTTgttaattatgattaattaaatcaataagtGGTTCAATTACAGAACTGAGCCCTtgtttggaatgaaaaccagaagacactagCTTTCCTGGGCCTTATTTGAAGAACCCTTCTATAAGAACTAAAATTAATTTTGGATGTAGTctgtaaaaacatcaacaataaacaaaacacataatcTCTCTGTATATAATTACTGCTGTTAAACATACCTAAGTGAAAGTTGAAAGTTTTGTATTCACTTTCCTTTCTCCAAGTACAAAGAATAAGCACACCACACTTtgggaatgaaaatgtaaagtgtgCACTAACATTGCCAAGTCTTAATACAAAAGACACAAGGCATACTACTTAATcactttataattatttgttttaaaataatttagtgcATGGACTTCCCtcttaaacatacatttcttgGGTGTAATCCCTGTAACAGCCTTGGTTTTAAGTTGCCTTTTGTGTCATGAAtcattgtatattttctgtagtaccaaaaatatagaaattatCTAAGAGTAATGAGTCATATACAAGTCATTATGCATGAATAAAAATCCTAATGCCAAACAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81567 lncRNA downstream 64404 31480756 ~ 31481969 (-) True G65221
TU81542 lncRNA downstream 133550 31390924 ~ 31412823 (-) True AMCG00020713
TU81517 lncRNA downstream 326629 31219543 ~ 31219744 (-) True G65179
TU81516 lncRNA downstream 328488 31212938 ~ 31217885 (-) True G65178
TU81496 lncRNA downstream 390108 31152419 ~ 31156265 (-) True G65166
TU81620 lncRNA upstream 87635 31648624 ~ 31648851 (-) True G65267
TU81656 lncRNA upstream 150545 31711534 ~ 31711764 (-) True G65297
TU81681 lncRNA upstream 195273 31756262 ~ 31756689 (-) True G65314
TU81682 lncRNA upstream 196462 31757451 ~ 31758500 (-) True G65315
TU81708 lncRNA upstream 224526 31785515 ~ 31803792 (-) True G65337
AMCG00020716 mRNA downstream 687 31544568 ~ 31545686 (-) True AMCG00020716
AMCG00020717 mRNA downstream 2714 31519225 ~ 31543659 (-) True AMCG00020717
AMCG00020712 mRNA downstream 97724 31435628 ~ 31448649 (-) True AMCG00020712
AMCG00020711 mRNA downstream 113420 31426521 ~ 31432953 (-) True AMCG00020711
AMCG00020713 mRNA downstream 142425 31365663 ~ 31403948 (-) False AMCG00020713
AMCG00020718 mRNA upstream 3844 31564833 ~ 31573696 (-) True AMCG00020718
AMCG00020721 mRNA upstream 33239 31594228 ~ 31594905 (-) True AMCG00020721
AMCG00020720 mRNA upstream 45299 31606288 ~ 31632057 (-) True AMCG00020720
AMCG00020726 mRNA upstream 101648 31662637 ~ 31670494 (-) True AMCG00020726
AMCG00020725 mRNA upstream 162192 31723181 ~ 31725760 (-) True AMCG00020725
TU81423 other downstream 737527 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1015237 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2013256 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2140737 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2749417 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 800246 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1046873 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1094145 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1325375 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1807636 33368625 ~ 33369105 (-) True G65756

Expression Profile