RNA id: AMCG00020721


Basic Information

Item Value
RNA id AMCG00020721
length 678
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00020721
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31594228 ~ 31594905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTATGCTGCTGTTTGAACAAGGTGTGCTGCTGGTCACATCAGACATGATGAAGCAGCTGGACAATGTCATTGACATCATGATCTGCAGCTCAGTGGTGTCCTCACTGTCCTTCCTCAGCGCCATTGCCGCGGACCGCTACATCACCATCTTTTATGCTCTGCGTTACCATAGCATCATGACCACCCAGCGTGCTGTGGCCATAATTGTGATCATCTGGGTGACCAGCACCATCTCCAGCACCCTGTTCATCGCCTACTACACAAACACCGCCGTCATCATCTGCCTCATCACCTTCTTCTGCATAATGCTGGTGTTCACAGCTGTGCTCTACCTCCACATGTTCATCCTGGCTCATCTGCACTCCAAGCGCATCAATGCCATCCAGAAGAGCCGGCGCCAGCACCAGGCGACCAGCATGAAGGGTGCCATCACTCTCACTATTCTGCTGGGCGTCTTCCTCATCTGCTGGGGCCCCTTCTTCCTCcacctcatcctcatcctcagcTGCCCCAAAAGTCCCTACTGCACCTGCTTTTCCAGTTTCTTCAACCTCTTTTTAATACTCATCATCTGCAACTCGCTTATAGACCCCATCATATACGCCTACAGGAGCCAAGAACTCCGAAAGACTCTGAAAGAACTGGTGTTCTGCTCTTGTTGGTTCTTGGCATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004980 melanocyte-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04199 MC1R; melanocortin 1 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81567 lncRNA downstream 112259 31480756 ~ 31481969 (-) True G65221
TU81542 lncRNA downstream 181405 31390924 ~ 31412823 (-) True AMCG00020713
TU81517 lncRNA downstream 374484 31219543 ~ 31219744 (-) True G65179
TU81516 lncRNA downstream 376343 31212938 ~ 31217885 (-) True G65178
TU81496 lncRNA downstream 437963 31152419 ~ 31156265 (-) True G65166
TU81620 lncRNA upstream 53719 31648624 ~ 31648851 (-) True G65267
TU81656 lncRNA upstream 116629 31711534 ~ 31711764 (-) True G65297
TU81681 lncRNA upstream 161357 31756262 ~ 31756689 (-) True G65314
TU81682 lncRNA upstream 162546 31757451 ~ 31758500 (-) True G65315
TU81708 lncRNA upstream 190610 31785515 ~ 31803792 (-) True G65337
AMCG00020718 mRNA downstream 20532 31564833 ~ 31573696 (-) True AMCG00020718
AMCG00020719 mRNA downstream 33239 31546373 ~ 31560989 (-) True AMCG00020719
AMCG00020716 mRNA downstream 48542 31544568 ~ 31545686 (-) True AMCG00020716
AMCG00020717 mRNA downstream 50569 31519225 ~ 31543659 (-) True AMCG00020717
AMCG00020712 mRNA downstream 145579 31435628 ~ 31448649 (-) True AMCG00020712
AMCG00020720 mRNA upstream 11383 31606288 ~ 31632057 (-) True AMCG00020720
AMCG00020726 mRNA upstream 67732 31662637 ~ 31670494 (-) True AMCG00020726
AMCG00020725 mRNA upstream 128276 31723181 ~ 31725760 (-) True AMCG00020725
AMCG00020727 mRNA upstream 136352 31731257 ~ 31734972 (-) True AMCG00020727
AMCG00020735 mRNA upstream 302421 31897326 ~ 31914451 (-) True AMCG00020735
TU81423 other downstream 785382 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1063092 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2061111 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2188592 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2797272 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 766330 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1012957 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1060229 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1291459 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1773720 33368625 ~ 33369105 (-) True G65756

Expression Profile