RNA id: AMCG00020722


Basic Information

Item Value
RNA id AMCG00020722
length 5537
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00020722
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31685129 ~ 31709788 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGTATTGTGCCAGTCAGGTTGGGGGAAACTGCAATGAAACGAATCTTATTACACTTTACTGTAAAATCTTGTGGGATAATACGGCGAATGAAAGCAGGAGAATACGgTCTCTGGTGCTGAATGCTGTTGTGTAGCCCTTGCCCAACCACAGGCCAGATGAGCAGACATGTCAGTTGAAGACTGAAATTCCGAGggcaggGAGCATGCAGTCTTCAGGCCACCGGCTCCGTGATGTGGAGCACCACGCTCTCCTGTCCGGGGAGGAGGATTACGAGGGGCCCCCAGGGGACGGCGAGCGAGTCTGGTTCATCCGCGACGGCTGTGGCATGGTCTGCGCCTTCATGACCTGGTTCCTGGTGCTGTATGCCGATTTTGTGGTGACCTTTGTCATGCTGCTGCCCTCCAAGAACTTCTGGTACGCTCTGGTCAACGGGGTGGCCTTCAACTGCCTGGCCGTAATGGCCCTCTCTGCACACCTGCGCACCATGCTGACCGACCCGGGTGCGGTGCCAAAGGGCAACGCCACGAAAGAGTACATGGACAGCCTGCAGCTCAAGCCAGGAGAGGTGATTTACAAGTGTCCCAAGTGCTGCAGCATCAAGCCAGAAAGAGCACACCACTGCAGTTTGGTGATTGAACTaatgctgccccccccccttccaGAGTGCAGTGACTTCTCCCCCCCGGTGACGGTCATCCTCATGATCTTCCTGTGTCTGGAGGGGCTGCTCTTCCTCACGTTCACCGCCGTCATGTTCGGCACACAGATCCACTCCATATGTAACGATGAAACGGAGATTGAGAGGCTGAAGAACGAGAAGCCCACGTGGGAGCGGAGGATGCGCTGGGAGGGGATGAAGACGGTGTTCGGCGGGCAGCCCTCCCTGCTGTGGATCAACCCCTTCGCTGGGCTCCGGCTCCGGCGCCTGCTGTCCCGCACGCGGCGGGGGGGGCCCGAGTTCTCCGTGTGAACCCCCTGTCCAGCACCACCCGGCCCCCCCGTGTTATACTGTGGCGCACCgctcccccttccctctctcctccaccccGACGCCCTCCCTGTGCCCTCACACCCCCCCTGCACCTCCACACACAGTCAGTGTAGACTTCAAAAGCGCACGAACGTGGGGCTCTCCTGTGTCTCGCAGCGACCGGACTACTGCTGGGGCTGCAGGGATCCTGAGCGAGGCTCCAGTCTGGCCATATGGGGGAGATTGTTGGCATTTCTGTTGCGCTGCTTTGACGGCAGTACAGTTATGTTAATccacagtatttgttttgttttcagggcagggcatttttattttgttttgcttttacaaTCACCCAACTAAGTGGAAAGCAACTCATCTAAAAGCCTAGCGAAAGGGTTCGTGAGGTTATATACTCTGGTGTGAAACACTATCCCAGATATAAAGGCTGCTGTAGACTTTTAGATCTGTTCTCTGTCCTGGGGAAAATTGCTGGATCTTGCGTGGAGAGAGAAGCTACAtccatctcttttttttttttttattacttttttttttaaatatagatctCTTGTGTTTTCATATCAGTGCTGCTTGCTTTCCTTCTTTCTCAGATTGCATGTTCTCTGCCAGGACTGGGAGAGTAACACACAAGAAAGGATATGGCAATACAGGACAGGGTGTGGGTCTATAGTATAACATGTCCTGCCTGGGCCAGTGGTGCCAGGAAGCAGGAAGAGAATGGCTGAAGAAACCACTAATGTGATCCTCTCCCTGGAGAGACCGTAAACCGACATGCTTCCCATatgtcatacattttatttttttatttgagcccTGCAAAGGTGTCATTGTTTGGAGCTTATCCATAGGAGGATCATTTGAAATACCACTGTGGTGAAACGGAATGAcaatgtatttaagaaaaagaGAGCAATCACTTTATTACTAATCTCCACCTGTCTCTTCCccattttcttgcatttttttgatcatgtattattatgtattgattgtctgttaaaagaaaaaagacaaattgcTGGTTGCCCAATACTTCCTGGCTACCATTGATTATGTCAGTAGTGTGGGAAGAGGTACCCAAATTCTAGATTCAATCAGACTGCTATCTCTCTACATACAAACTCCCTTAATGCAATTATAAAGTGTGTGCATCTTAGTTTGCTCCTTAAAACAAATGATGCCAAACTTGAAATCAATTGTTCGATGAATTAGAGTCCCCCCAAGTATGTGGGGTGCTCAGTATAAAGGTGGAGTTATAGAAGAGGTATAACTATACACCGATCAAGCCATTCAAGAGGGAAAACTGGCGATATGCACGGGGGCATTATAAAGTGGGGGTGTGGCATTAATAGAGCCGCTCATTTATCTTTACCAAGCATTGCCTCTCTGAACAAGTCTCTTTTTATTGCGCTTTCCCTGTAGATTACAATGAGGGTTGCAATACCTTGGCCAAAATAAAGGAACTCAGTATTTATTTCAGGTAATTAAGTTAACAATGGTTCTTTATAAAAAACTTTGATCTTGGAAATTGATCTCAATCTTGGCTGTCTGTTTTTGGGAAGCTattataagattatatatattttttcttaattattattttaaacttcttGTTGGCTGTGGCAATCCAGGATGCACTACCGTTCATACAATCATCATATCTCTGGGATGCATATATGCTTTTCCGCTTCCAAGATGAATTGACTTGTGTATCATTACTTTAACAAAACCTTGTAACAGTGTCTCTTCATGCACTGTAGAACTGCACACAAGGCCTCTACACCAGAATTGACTGACAAGGGCAAATCCGTGGCAGTTATGGATGTGCTAAAGGAATCAtatgtaaaacaacaattacaattctgcagattgttatttttcccccctccccaaccATAATGGCTCAGAGTCTGTGCTCTACTACATAAATGACCGGAAAGATTTCCAGTATTTCTCAAttggtatgtatatatagaaagtatatacacactttattaccaaaagtattgggacaatAGATTAAATGCAGACAGCTCACAATGTGTTTAATAGACTTTTAATATATGGCCAGAGTTCTGCTGTGCTATTCCTCCAGCCGTGCACATACATAGTGCGGAGAAGTTTATGATCTCTACCTGCATTGCTCTGCCACCTCATCCAACATGTGTATTGAGGGTTTGAGATCAGGGCAGTGAATCAGTGCCATTACATTTATTCTATCCTATTCTTCATGAACCCACTGTATTCAGATGCCAGGCTTCTGAAAAGGTACATTATAGTGTTGGTGTTGGCCATTAGATTAAAAGGTTATCAAGCCTGGCAGATCACTTTTCACCAGATCGGCTGGTCATAGTGCCcttcacaaaaaacaacccCTGCACGACCTACCACAATCCATAATGAAATGCTTTATTGTAGAAGGGAAGTCTGTCCCATCACTTATGGAAATATAGTTTGTGTACATATGGATGATTTATTACTGGAGGatttagattgtttttattaataatattgtttttttaagcaatatttgtgttttaaattgtctttATAATGTGTAGTCCTTTTGCATAATAAAGTTATTAGTTTACAATGATGTATGGTAAGCCTATATGAAAACTACGAGCAGTTCAATCCAGTGTCTTCGGATACccaagggaaaaaacaaaacaaaaactgggaAATCACATGTCCATTAGAAATCAGATCTAAGCATTCCCCTAGTGAAAGTGTAAGACAGAACTATTTCTCTCCCTGTGCACTGCAGCCAGGCTTTTTAATTGCTAATCTGGGAGTGCCTTCCCTTGATGATGATGTAAAAGATATGgggtttaaaacaaattatattctgATCTAAAATGGTCTCTGTAACAGATGAAAGACATGAGGATCAAGCTGTATAGCAGCATGtctgttcatttattatttatttaatatttaactggAATATGGGGAATACattagattaaaataatgtatttttgtgatgCTGTATTTCCATGTAGCATTTTACAAGATTGATCAGCTGCAAATGTGTGAAACTCCCATAACAAAATGGCTTGATGAATCTCATAGTGAGGGATACAGTTTACTTACACAAGACTGGCGCTATGAGAGATTGGTGCTCAAGCcctctttttttaatcatatactGGACTGACAGATTGCCAGATGAAAACATTTGTGGGGTTTCGCATGATTGGAGTTTTCAAATGAGAGcatggctttctttttttcatttaaaaaaacactgcacagtGTATGTAATCCAGTCCCACATGTTATGAGCTTTTAGGATGTACAGTATTTGAGGGGGATCTTCTCAAGGATCTAgattaaaaaagcacaacaaaccTGCTGGATTGAAGCATTGTAAATGCTTTAGATACATGTTTGGCTTTACACAGAAATCTTTTCCCAGTAGCCACAGTACCCTCTtgtatttttccaaaacaaataaataaatgcatacttGTGTTGTACAGTTTTAAATTACCTCCTAAAGGGATGTAAAGAGATCAAGATTTAATCACTTACCCCTTTTTAAATAGATTGATAGGCAGAAATGTTATACTTTGGTTTGGTAAATGAGTCCCAATctgattatattataaaatatcatATTCTGTAGAAGCTTATACTCTGTACAGTAAAAGTAGTGCTGAGAAGAGCATAGCtatttttgtgtcattttttccagttattttaaaaatatgaaaaaggaagacaataaaatgcattgctttcCTCAGTATTCTTTTATATACCTCTGTTTTGAGATTATCATGGTTGTATTCCAAGGGAGAAGCAACTGAAAACAGtgcttacaaatatataatttgagtACTTTCATATGTAATCAGAATCTGAAATGTATGCCAATTAGCTCATAGCTTAGTTCAAGTTCTTAAGATGGTGCTACAAGGTTTTTGTCTCTTTAATGGAGCAGTTTATATGGTCTGATTTTTCctgttattcttatttattgcattatttaattatctgtgTACTAGGGTAGCCTCAGCACTTGTGTACACATTTCACCTTAGTCTCACTGGTACAGTAATTACAGCTCCTGGGAAACTCTTGCAGTGAAAAACTGGACACAATAATTTCATAACACACTTTCACAACATTAAAAGCCTTCCCCTTTGAATTTCCTCTCATTTTGGTTACTGGATACATTTCAGATGCTATTTCAAAgtaatgacaaattaaaaacaggaaaaccatAAAAGGTAATCAAATAGAAGACATGCAACAGAGGACTGTAATAAATAAGAACTGATTTAACAGGAAAACATGAGTACCATAATCTTCTTTATTTACTGCTTTATAAAAGCCTCTGCCAAAGGGTACCTCTCTGTTAAGGGATGGGCAGGAATCACTGTGGTCCTGATGTTTTGTATGGAACGATATGTATTAGCTTTAAATGTCTaggaagtaaaagaaaatgtagattATAATGGATATGGAATGGTTAACTTTtactctttttctttgtttgtactATTCTAATCAGTGGAAGCCTCTGCAGTTT

Function

GO: NA

KEGG:

id description
K20029 ZDHHC3_7_25; palmitoyltransferase ZDHHC3/7/25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81629 lncRNA upstream 1975 31682114 ~ 31683154 (+) True G65276
TU81623 lncRNA upstream 25674 31657726 ~ 31659455 (+) True G65270
TU81619 lncRNA upstream 48800 31635763 ~ 31636329 (+) True G65266
TU81596 lncRNA upstream 118770 31564833 ~ 31566359 (+) True G65246
TU81570 lncRNA upstream 199227 31485583 ~ 31485902 (+) True G65223
TU81648 lncRNA downstream 1757 31711545 ~ 31711765 (+) True G65290
TU81702 lncRNA downstream 75029 31784817 ~ 31785133 (+) True G65332
TU81799 lncRNA downstream 383183 32092971 ~ 32093171 (+) True G65413
TU81835 lncRNA downstream 472574 32182362 ~ 32268201 (+) True G65437
TU81852 lncRNA downstream 524362 32234150 ~ 32253861 (+) True G65450
AMCG00020714 mRNA upstream 181175 31496044 ~ 31503954 (+) True AMCG00020714
AMCG00020715 mRNA upstream 201423 31460314 ~ 31483706 (+) False AMCG00020715
AMCG00020710 mRNA upstream 265774 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020709 mRNA upstream 451505 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020708 mRNA upstream 469610 31201950 ~ 31215519 (+) False AMCG00020708
AMCG00020723 mRNA downstream 4108 31713896 ~ 31720373 (+) True AMCG00020723
AMCG00020724 mRNA downstream 11074 31720862 ~ 31723055 (+) True AMCG00020724
AMCG00020729 mRNA downstream 16396 31726184 ~ 31753719 (+) True AMCG00020729
AMCG00020728 mRNA downstream 44524 31754312 ~ 31758498 (+) True AMCG00020728
AMCG00020731 mRNA downstream 49112 31758900 ~ 31769036 (+) True AMCG00020731
TU81555 other upstream 200659 31459502 ~ 31484470 (+) True AMCG00020715
TU81504 other upstream 467289 31162601 ~ 31217840 (+) True AMCG00020708
TU81412 other upstream 914202 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 2109783 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 2219417 29464564 ~ 29465712 (+) True G64979
TU81717 other downstream 153595 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 384236 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 476826 32186614 ~ 32189381 (+) True G65433
TU81856 other downstream 564498 32274286 ~ 32278972 (+) False AMCG00020748
TU82011 other downstream 882694 32592482 ~ 32594454 (+) True G65590

Expression Profile