RNA id: AMCG00020725


Basic Information

Item Value
RNA id AMCG00020725
length 1117
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00020725
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31723181 ~ 31725760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTTTACCCACGTGTTGTCGCGCAGTGTGTTTGGGGTTAGTGCATTTTGTAACCATACGtagaatattataaaatataaagatgcGGCCTCTtacagaagaagaaacaaaaacgaTGTTTGAAAAACTTTCGAAATATATCGGAGAGAATATTAAGCTCCTGGTTGATCGACCAGACGGGACCTATTGCTTCAGACTGCACAACGATCGTGTGTATTACATAAGTGAAAAAATCCTTAAACTGGCAACAAACATCTCTCGGGAAAAGCTTGTGTCTCTGGGAACATGCTTTGGGAAGTTCACCAAAACTCAGAAGTTTCGCCTGCACATTACAGCTTTAGACTTCCTGGCTCCCTACGCAAAGttcaAGGTATGGGTGAAGCCCGGAGCAGAGCAGTCATTCCTATATGGGAACCACATCCTGAAGTCAGGCCTGGGCCGGATCACAGAGAATACCATCCAATACCAGGGGGTGGTGGTGTACTCCATGGCAGATGTGCCACTGGGATTCGGAGTGGCAGCTAAATCCACGCAGGAGTGCCGACGGGTGGATCCCATGTCCATTGTAGTGTTCCACCAGACGGACATTGGGGAATACATAAGGAGCGAGGACACACTCACATAAAGCAAATCGACATCCATCTTGAACACAGACTGTACAGAGGAGCAGGGATGGGGTGGGGCAGCCCCTTCCCGAAAACACACGCCCTCAGCAACATGAAAAACAGAGTGCTGCCTTTCCCTTGCATCGGCGAGGATCCCTGGACCGAGAACTGCGGagcccaccaccacccccctgCCAGCAGAGGTCCACAACAGTAATGGCCACAAATACTTACAAAAAAAGTTTCTGAAAGTTGAAgacatgcatttgtgttttttgtaaatcacatttattcttgttaattgaaaatattaaacatatttggaGTTAAATAAGCAGTTCTTATTTGCAATCATCATTCAGTAATCGCCAAAAGGGAATGTGTAAGCGCTGTCTAGGTTCATAGGTTCAATCTTTTCTTCTCTAGAACAGTGGTTTTGAAAAAGGTCAACCTCTAGGTTTGCTtatttaattctgaaacacAAGCATTTTAGTGCACTTGGGAAATGTGTC

Function

GO:

id name namespace
GO:0042255 ribosome assembly biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81656 lncRNA downstream 11417 31711534 ~ 31711764 (-) True G65297
TU81620 lncRNA downstream 74330 31648624 ~ 31648851 (-) True G65267
TU81567 lncRNA downstream 241212 31480756 ~ 31481969 (-) True G65221
TU81542 lncRNA downstream 310358 31390924 ~ 31412823 (-) True AMCG00020713
TU81517 lncRNA downstream 503437 31219543 ~ 31219744 (-) True G65179
TU81681 lncRNA upstream 30502 31756262 ~ 31756689 (-) True G65314
TU81682 lncRNA upstream 31691 31757451 ~ 31758500 (-) True G65315
TU81708 lncRNA upstream 59755 31785515 ~ 31803792 (-) True G65337
TU81780 lncRNA upstream 332558 32058318 ~ 32061297 (-) True G65397
TU81868 lncRNA upstream 396125 32121885 ~ 32122833 (-) True AMCG00020746
AMCG00020726 mRNA downstream 52687 31662637 ~ 31670494 (-) True AMCG00020726
AMCG00020720 mRNA downstream 91124 31606288 ~ 31632057 (-) True AMCG00020720
AMCG00020721 mRNA downstream 128276 31594228 ~ 31594905 (-) True AMCG00020721
AMCG00020718 mRNA downstream 149485 31564833 ~ 31573696 (-) True AMCG00020718
AMCG00020719 mRNA downstream 162192 31546373 ~ 31560989 (-) True AMCG00020719
AMCG00020727 mRNA upstream 5497 31731257 ~ 31734972 (-) True AMCG00020727
AMCG00020735 mRNA upstream 171566 31897326 ~ 31914451 (-) True AMCG00020735
AMCG00020739 mRNA upstream 298562 32024322 ~ 32038155 (-) True AMCG00020739
AMCG00020745 mRNA upstream 345441 32071201 ~ 32083067 (-) True AMCG00020745
AMCG00020744 mRNA upstream 378970 32104730 ~ 32109416 (-) True AMCG00020744
TU81423 other downstream 914335 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1192045 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2190064 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2317545 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2926225 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 635475 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 882102 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 929374 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1160604 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1642865 33368625 ~ 33369105 (-) True G65756

Expression Profile