RNA id: AMCG00020726


Basic Information

Item Value
RNA id AMCG00020726
length 1768
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00020726
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31662637 ~ 31670494 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTTTATTCTACTCTCCAGGGGGGAAGAGGGATGAGGATTTAATCTTGCCCATAAATTCCTCTTTGAGTGTCACACTTCACCAAGACCAGCTGAAGACCACTACCACAGTCGCCTCCAGTCGTCACTTTAAAGAAGATCGCATCTGGCTCAATGGCAAAGAGGACAACATCAACCAGCCGCGACTGCAGTCCTGTTTGAGAGAAATGTACACATTGGCCCGGCTGTACGGGGTGGAGGGCGAGCTGTCGGAAGTGGCGCGGCAGGGCTCGGGCAGTGCGTGCCGCAGTATGTATGGGGGCTTTGTGCAGTGGCGCATGGGAGAGCGGACTGATGGGAAGGACAGCGTGGCGGAGCAGGTGGAGGCTGAATCTCACTGGCCGGAGCTACGCGTGTTAATTCTGGTGGTGAGTGCGGAGCGTAAACCAGTCGGAAGTACGGCAGGTATGCATACGAGCGTGGAGACCAGCCTACTTCTAAAGCACCGGGCCGACTCTGTGGTTCCTGGAAGGATGACTGAGATGATAAGTGCCATCCGCCAGCGGGACTTCGCCGCGTTTGGAGAGCTGACCATGAAGGACAGCAACCAGTTCCATGCCACCTGCCTGGACACCTACCCCCCCATCTTCTACCTGAATGACGTGTCTCATCGCATCATCAGGATGGTGCACTGCTACAACGCGCACTATGGACACACCCGGGTAGCATACACATTTGATGCCGGCCCCAATGCTGTGATCTACACACTGGAGGAGCACGTGGATGAGTTTGTGCAGGTGGTCAAGCACTTCTTCCCCCCGGAAAACAATGGAGGACAGTTCCTCAAGGGTCTGTCTGTGAGCCCAGTGTCTCTGTCTGAGGAGGTGAAAACTGCCATTGCAGTGGAGCCCACTCCCAAAGGAATCAGCTACATCATCAACACAAAGGCAGGCCCAGGTCCTTGCATGGTGGAAGAGCCCAGCCTCCATCTTTTGGGAGCAGATGGATTACCCAAGCAAACGGTTTGATCATAGACCATCAACAAAGAATACCCAGCAGCTCTGGGCCAGTAGGAAGCACAGAATACGTCAAACAAAGTATCAGGAAATTAATTATAGCCATGATGGTTGATAAACAGTTACCCCAGTATTCTCCAgctccccccctccacacacacaatcggacaattcatgtatattttatgagatatttgaatacaataatttgtggcaggcactgtcctaaACTATTATACCATTTGTAATGTGGAGTTTAAAAAATTGTGTTTGTAGAGGAATTGAGGAGACTGCTTGAATctgcaattatatttataatttatcatCAGTGTGTCACATCAGCTGTCGGTTAAAATGGAGTAGAAATGGATGGAATGCAAATCGAGAGATTGTGACCAGACTTTGGATTTGCACATCTGTTGGCTCCGAAAAGCATTCTATACACAAAGTGGAAGACTTTCAAAACTATGGGCTCTATTGCAGATGTTCCTACACTTTTCTGTTTCCAACTGATTTTCTGAAACTATTTatagaataaatgttttaatttactatactgtatactatactatactggcATCTGTAAAGTAATTTTCCAGAGAATGCTGAGGTATACACCTTTAATATGACCATCTTTGTATgttgaagtatttatttgagGTGCTACATGTTTTCTGTAGGCAGGACATCTGTATAGTGTAGAAGACATGTAAATAACTTTGCTGTGCCTTGCCTGCTAATTGCCTCTGAAATAAAAAGTTTTGTAATTTCA

Function

GO: NA

KEGG:

id description
K01597 MVD, mvaD; diphosphomevalonate decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81620 lncRNA downstream 13786 31648624 ~ 31648851 (-) True G65267
TU81567 lncRNA downstream 180668 31480756 ~ 31481969 (-) True G65221
TU81542 lncRNA downstream 249814 31390924 ~ 31412823 (-) True AMCG00020713
TU81517 lncRNA downstream 442893 31219543 ~ 31219744 (-) True G65179
TU81516 lncRNA downstream 444752 31212938 ~ 31217885 (-) True G65178
TU81656 lncRNA upstream 41040 31711534 ~ 31711764 (-) True G65297
TU81681 lncRNA upstream 85768 31756262 ~ 31756689 (-) True G65314
TU81682 lncRNA upstream 86957 31757451 ~ 31758500 (-) True G65315
TU81708 lncRNA upstream 115021 31785515 ~ 31803792 (-) True G65337
TU81780 lncRNA upstream 387824 32058318 ~ 32061297 (-) True G65397
AMCG00020720 mRNA downstream 30580 31606288 ~ 31632057 (-) True AMCG00020720
AMCG00020721 mRNA downstream 67732 31594228 ~ 31594905 (-) True AMCG00020721
AMCG00020718 mRNA downstream 88941 31564833 ~ 31573696 (-) True AMCG00020718
AMCG00020719 mRNA downstream 101648 31546373 ~ 31560989 (-) True AMCG00020719
AMCG00020716 mRNA downstream 116951 31544568 ~ 31545686 (-) True AMCG00020716
AMCG00020725 mRNA upstream 52687 31723181 ~ 31725760 (-) True AMCG00020725
AMCG00020727 mRNA upstream 60763 31731257 ~ 31734972 (-) True AMCG00020727
AMCG00020735 mRNA upstream 226832 31897326 ~ 31914451 (-) True AMCG00020735
AMCG00020739 mRNA upstream 353828 32024322 ~ 32038155 (-) True AMCG00020739
AMCG00020745 mRNA upstream 400707 32071201 ~ 32083067 (-) True AMCG00020745
TU81423 other downstream 853791 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1131501 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2129520 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2257001 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2865681 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 690741 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 937368 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 984640 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1215870 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1698131 33368625 ~ 33369105 (-) True G65756

Expression Profile