RNA id: AMCG00020735


Basic Information

Item Value
RNA id AMCG00020735
length 2816
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00020735
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31897326 ~ 31914451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTACTGTAGCTGAGAGGTTTAGTAATATATCATACCATTCCCATgtataataaagtaaaacataattttaaaaacacttaaaaaggaaattatttaaagatcaaCAGagcttttttggtttttatgcAACCACAGGAGAAACACTGTTCAACGAGtggtgggttttgtttttcctctttaacTTAAAAATACCACAACGGGGCGGCTTTTATGAGGAGAGAAATTTTGCGTGTGCTTTCCAAAAGAGGGGGGAAACAGCAGGAAAAAACAGCCACTGTGTAGCTCAACAGCCGTGCAAGATGCTGACGTTATTTTAGTCCCGATCAAGCTTTGGCTATGTGAAGGTAATAGACGTAGTCTGTTCAGCCAacaagactttttttaatgttaaagtgAAACCTATATCATTGGGATAGCAGCAAGAGGAGAAATCAGTTCAATTGAGTGAGATAGTTGGCTGTTGAAGACATCAGCAGAAGCCCGTCCGTGGATTCCTGTCAAGATGTTCTGGAGACAGGTTGTCATGGtgagcctctctctctgtctgatgCACATCTCTTCTCAGCAGGACTGCCCGAGCCAGCAGGACTTGTCAACCTCTTTAAGGCACGTCCAAAAGCTGCTGTCTGCTCAGGAGGCCTCCTATCTGCAGAGCCTGCGCACCCTGAGGAAAAAGCTCAATCACCTCCAGAGCACCATCCTCAGGCAGGCCAGCAAGGCCAACGCGACCTGCCCCAAGCTAGAGCCGCCTAGCCACGGCAGGAAACTGGGAAAGCTGACAGCCGTGGGCCATGAAGTGCACTTCCTGTGTGAGCTGGGGTTCGATCTGGTGGGCTCAGAGAGCAGAGTGTGTCAGGACTCCCTGAGCTGGAGTGGCCAGCAGCCCACCTGCAAGAATATAAACGAATGTGCACAGATGCCCTGTCTGAACGGAGGGACTTGTGTGGATGAAGTGAACCATTATGTCTGCATGTGTCCCAAAAGTTGGACTGGTCCCAACTGCCAGAATCCGGTACACACCTCAGATTGGAGCACGCTGACgaactcctcctcctcctccccacaTGTCCGGCCGTCTCGGTGCACACAGCTCCAGGGCTCCACACACTGCACCTGTGAGGCGGGATTCACCATCGCTGGCCGGGACAACAGCCTTTGCAGGGacatTGATGAGTGTGAGCTTTTCCACACGGGGAGGAGGGGGCGCCTGTGTGCGCACGCCTGTGGCAATACGCCTGGCTCCTACCGCTGCACCTGCCCCCCCGGCTACAACCTCACCCCTGACCAGCGCAACTGCAAAGATGTGGACGAGTGCACCACCCGTCAGCACAACTGCAGCCAGGAGGCCGTGTGTGTGAACACCCACGGGGGCTTCCAGTGCGTGCAACCCGAGTGCCCCCGCTCCCGCAATGCCACCTATGTCAAGACCTCCCCGCTgcgGTGTGAGCGCAACCCCTGCCCTGTGGACAACAAGGCCTGTGCCCAGGCTCCCTCCTCAGTCTCCTTCAGCTACCTCTCCCTGGTGTCGAACCTGACCACACCACGTGTGCTGTTCCGGCTGTCTGCGGCGCGGGTGCTGGGGGACAGTCTGAGGTTTGGGCTGCTGGGAGGGCGTGGACGGCGCCATTTCACCGTGCAGCGCTCTGACCGCCTCACCGGGCAGCTGCTCCTGGTTAGCCCAGTGCAGGGCCCTGCCACGCTGGAGGCCGAGATGGAGATGAGCGAGCTGGAGAGGAGGGCCGTGCTTGGCCGCTACGTCACCAAGGTGACCCTCTTCGTCTCGCAGTATGACTTCTAGACCCAGACAGACTCACGTGGCATGCACTCATCGCAACACCATAAGAGCTATAGTGTCCCTTTCTGCTCACAAGAATATTAACCcattatttaaactttaaatttcTTCTACAGTTCTTCTACAGTTACAGATTGCAAATTGATATACATAACATATCTCAAGACTGTAGCATGAGACTAAAGACTGGTACCAACCACAGCACGACTGCAGCCGTAAGCATAATCTTTATCTCCCTGGTCTCTGGCTACTTCAAGAGTGTTTTATCTAGGATGTGGCCAATGACTGTCTTCATGCAGTGAATGTGGGGCTTGTTATACAAGTTATACTAGTGTGGCACTACTAATATATTGCCAAAATCATAACGATGAAATCTACAATGACAAACAACATGATGCACTCTAAATAAACCAAATTTAAAAGCTTGTAATCGagacaaaaacatatattaatctGTAATAAAACAGTCAACCGCAGCTCGGGACAACGTGGGGCTTTGACAATGTCCAGGTCTTCTAAGCTTGTTGCCAAACTGTTTTTATACGACttattttttagaattgtaATGGTTGTAGGTTTACCATTTGTATCGGCGACAATAACAAAGTTTACAGTTgatatgtattgtaatgttcTAGGAAGCATCAGTGTGCTTTTTATTTAGTAAAGCTTATTTTCTAGGGCTATTTCTTGAAGTCTTTGCATCATCTTCATTTGGAAGCGAGTGGCGTTGAACATATTGCAAATCACTAGTCCAGGTAATACATAATGCAGGCAGACTTAAAGAACATGCCTTTATACATTGAACAAAGTTCTGTAAGAGCAATTAAAAGTCCTTATACAATTTTTAGTAGCTGAAGATGAAATTGTAACCAGGTTGAGCAATTTGACTAGATTAGAGACTTTCACAGAGGGGTTTTCCAATTATTTGTGGTTGTGCGTCCTCCTGTAAATGTTCATGTTATCCAATTATAGCATTTGTACTTCTTTAAATATCAGTGTTTTATAGTGAAATGAGG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81708 lncRNA downstream 93534 31785515 ~ 31803792 (-) True G65337
TU81682 lncRNA downstream 138826 31757451 ~ 31758500 (-) True G65315
TU81681 lncRNA downstream 140637 31756262 ~ 31756689 (-) True G65314
TU81656 lncRNA downstream 185562 31711534 ~ 31711764 (-) True G65297
TU81620 lncRNA downstream 248475 31648624 ~ 31648851 (-) True G65267
TU81780 lncRNA upstream 143867 32058318 ~ 32061297 (-) True G65397
TU81868 lncRNA upstream 207434 32121885 ~ 32122833 (-) True AMCG00020746
TU81870 lncRNA upstream 272031 32186482 ~ 32187711 (-) True G65465
TU81873 lncRNA upstream 298276 32212727 ~ 32215757 (-) True G65468
TU81961 lncRNA upstream 443787 32358238 ~ 32365142 (-) False G65549
AMCG00020727 mRNA downstream 162354 31731257 ~ 31734972 (-) True AMCG00020727
AMCG00020725 mRNA downstream 171566 31723181 ~ 31725760 (-) True AMCG00020725
AMCG00020726 mRNA downstream 226832 31662637 ~ 31670494 (-) True AMCG00020726
AMCG00020720 mRNA downstream 265269 31606288 ~ 31632057 (-) True AMCG00020720
AMCG00020721 mRNA downstream 302421 31594228 ~ 31594905 (-) True AMCG00020721
AMCG00020739 mRNA upstream 109871 32024322 ~ 32038155 (-) True AMCG00020739
AMCG00020745 mRNA upstream 156750 32071201 ~ 32083067 (-) True AMCG00020745
AMCG00020744 mRNA upstream 190279 32104730 ~ 32109416 (-) True AMCG00020744
AMCG00020746 mRNA upstream 208252 32122703 ~ 32122933 (-) False AMCG00020746
AMCG00020743 mRNA upstream 208940 32123391 ~ 32138907 (-) True AMCG00020743
TU81423 other downstream 1088480 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1366190 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2364209 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2491690 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 3100370 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 446784 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 693411 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 740683 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 971913 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1454174 33368625 ~ 33369105 (-) True G65756

Expression Profile