RNA id: TU81856



Basic Information


Item Value
RNA id TU81856
length 743
RNA type TUCP
GC content 0.67
exon number 5
gene id AMCG00020748
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32274286 ~ 32280835 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCACCAGAAGCTGCGGGGTTGCCATGGGGATGCGTACCCGCTTGGGGGAAACGTGTGCACTGCGTCATCAGTTTGCGTTGCTCTGCTCGTCAGTTACCTTTGCGGTTGCTGTCGGACTTAATAAGCCCCCAGCGATCCCGTGTGTCTGAGTGGAGGATGTGTGAAGGACTGTCCCGGATCTCGGGGCCCATCCCCCCGGACCCCTCGCTGTTCCCCGAGCTGTACCGCCGCCCTGCTTCAGCCCGTGGGCGTTTGGAGGGCAATGATATGAAGCTGGCCCTGCTGGCCGGCCCACTGGCCCCTGACCCCACCCTGCACCCTGGCTGCTACAGTGCTCGGGCCCCCCCTCCGCCCCGCGTGCGCCCCAACGCCACACACATCCTGGAGAGGGGTCAGCGGGGGGTCGTGGGGAGCCTGCTGCAGCTGGAGGGCATCGCCTTGGACCCCGGACCACCGAAACACAgGAAGGAGGTGCGTGACCATGGCAAGGAGAACGTGCGCCGGCTCCGTGAGATTCAGCGCCGCTGTCGGGAGCGCGAGGCTGAGAGGGGCGGGGTGGCCGCTGGGCCGGTCCGCGCGCTCTGGAGGTCCCCCAAATACGACACTGTGCCCTCAAAGGTCATGAGCCAGCTGCAGGAGACGACCCCCCCCAAGAAGCCAGAGTGTCAGAACTTCCTGAAGGCACACTCGCGCTGTGGCAGTGCCGGCCCCCCCCCGCGCCGCCCACCCTCCTGCCCTGCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81854 lncRNA upstream 4829 32268626 ~ 32269457 (+) True G65452
TU81835 lncRNA upstream 6085 32182362 ~ 32268201 (+) True G65437
TU81852 lncRNA upstream 20425 32234150 ~ 32253861 (+) True G65450
TU81799 lncRNA upstream 181115 32092971 ~ 32093171 (+) True G65413
TU81702 lncRNA upstream 489153 31784817 ~ 31785133 (+) True G65332
TU81909 lncRNA downstream 28466 32307438 ~ 32307719 (+) True G65503
TU81944 lncRNA downstream 164909 32443881 ~ 32444644 (+) True G65534
TU81997 lncRNA downstream 284458 32563430 ~ 32585714 (+) True G65579
TU82017 lncRNA downstream 350751 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA downstream 350751 32629723 ~ 32686320 (+) False G65594
AMCG00020750 mRNA upstream 10579 32254128 ~ 32263707 (+) True AMCG00020750
AMCG00020747 mRNA upstream 42134 32223206 ~ 32232152 (+) True AMCG00020747
AMCG00020741 mRNA upstream 154708 32110530 ~ 32119578 (+) True AMCG00020741
AMCG00020740 mRNA upstream 176972 32095411 ~ 32097314 (+) True AMCG00020740
AMCG00020742 mRNA upstream 179156 32094063 ~ 32095130 (+) False AMCG00020742
AMCG00020749 mRNA downstream 2609 32281581 ~ 32289339 (+) True AMCG00020749
AMCG00020754 mRNA downstream 31518 32310490 ~ 32314382 (+) True AMCG00020754
AMCG00020756 mRNA downstream 67690 32346662 ~ 32355829 (+) True AMCG00020756
AMCG00020755 mRNA downstream 78886 32357858 ~ 32362662 (+) True AMCG00020755
AMCG00020759 mRNA downstream 171205 32450177 ~ 32454833 (+) True AMCG00020759
TU81825 other upstream 84905 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 179100 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 409580 31863383 ~ 31864706 (+) True G65343
TU81555 other upstream 789816 31459502 ~ 31484470 (+) True AMCG00020715
TU81504 other upstream 1056446 31162601 ~ 31217840 (+) True AMCG00020708
TU82011 other downstream 313510 32592482 ~ 32594454 (+) True G65590
TU82142 other downstream 667759 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 828901 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1675834 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1780139 34059111 ~ 34059465 (+) True G65830

Expression Profile