RNA id: AMCG00020752


Basic Information

Item Value
RNA id AMCG00020752
length 2005
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00020752
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32234154 ~ 32244478 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGGCCGGACAGCGCATTTGTGCGGACTTTACATTGACATATCTGGAGCCGGCTGCTTCAAATCTACAAACACACGGACGGGTCGCGgagagacggacagacggacagacagacacgggCCTGGACAGACGGGTAGAAAGGTGCAGACAGACTGatagacagacggacagacagacagcgaTGAAGAGAGCTCTGTGTGGACTGGTGTTCCTCGCTGCTCTCTGCTGCTCCCTAGGGACAGAGatgagCCACAGGCGGAGCCGCAGAGGGACTCGTGTGTTCGGAGAGCGCTGTATGGATGATCAGCAGAGATCAATGCACGGGCACGGGGACACCTGGCTGCGCTGGCAGGGTCAGCGGGTGGAGTTCTGCCGCTGTGCCCGTGGGATGACACGGTGTCACGCGGTGCCAGTCATCAACACGGAGGAGAAGTGTGCGACGGGCCGAGGCGTGGGGTACCGGGGCACATGGGCCGTAACCCGTTCGGGGGCCAACTGCATCAACTGGAATGCCACAGCCCTGGTAGTCAAGAAGTATCACGCCCGCCTGCCCAACAGCGCCACCCTGGGGCTGGACAACCACAACTACTGCAGGAACCCCGACAACGACACCCTGCCGTGGTGCTACGTGTACAGCGGCGTGCAGCTCACCTGGGAGCACTGCAGCCTGCCCGCCTGCCAATCAGGGTCATGTGGAGTGAGGGAGCCAGCCCTGAGGCGTCAGTTTCGGATCAAAGGCGGATCGGTGTCTGACATCACCGCACACCCCTGGCAGGCGGCCCTCACAGTGTACAGCCCCCGTGCCAAAGACTACAACTTCTTCTGCGGCGGCATGCTGATCGACTCCTGCTGGGTCGTGTCCGCCGCCCACTGCTTCGATGAGGGGTTTGAGGTCAGCCGGTTGCAGGTGGTGCTGGGCAGGACGTTCCGTCTAGAGAACTCGTCCAGCGAACAGCTGTTCTCCGTGCAGCAGTACTGGTGTAGTGTGTTAAcccgtctctctctgtttttagTGCTGCTGAAGCTGCAGAGCACCGATGGGCTGTGTGCCATTGAGACCCCCTCAGTGCGGCCGGTCTGTCTGCCCTCACCTGACTTCAAGCTGCCCGACTGGACAGAGTGTGAGATCTCAGGCTACGGAAAAGAGCAGGAGTTCTCTGCGTTCTACTCATTGCGCCTGAAGCAGGGGCAGGTGCGGCTGTGGCCGGACGCACAGTGCACATCTGATCGGCTGGACAACCGGCTGGTCACTCAGAACATGCTGTGTGCCGGAGACACGCGTGGACTGGACGACGCCTGCAAGgggGACTCGGGTGGGCCGCTGGTTTGCCCCCAGCCCAGTGACGGCCGCATGGTCCTGATGGGCGTGATCAGCTGGGGTGACGGCTGTGGGAAAAAAGACACACCCGGAGTCTACACACGTGTTACACGCTACATACAGTGGatcaacacacacattcagacacaCTCCCgttgagacacagagagaaagaaacagacataggtaaacaccacacacacacacacacacacacacacacacacacacacacacacagaccaggcCCACTGCAGACTAGCACAACAGTATCTGCTGGAACAGATTTTCACACTCACTCtaacacactcccacacacacactcccacagcCCTGGTGCACACGTGTGGATGGGCTTCTCACTCTTTGTACCTATAAGCAGCTGTGCaatttttgtataaaattatatttaaatacaaatcagtaaGTGAATATATTTATGGAGACTATTGCTGTTTTATACCTTGAACTGGAACAAAACCAGCATGAAGAACTTAAAAAGCATAGAACTGTAATTAttgctcattattattattattccttatttatttttaagtactgTATTTAACCTACTGCTTTTTTACATAGGGTCCATACtggtaatttaattttgtatatttttatattattattttgtgtttttttgtaacacaaggactgttttaataaaaattgactgttcacac

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01343 PLAT; tissue plasminogen activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81873 lncRNA downstream 18397 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 46443 32186482 ~ 32187711 (-) True G65465
TU81868 lncRNA downstream 111321 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 172857 32058318 ~ 32061297 (-) True G65397
TU81708 lncRNA downstream 430362 31785515 ~ 31803792 (-) True G65337
TU81961 lncRNA upstream 113760 32358238 ~ 32365142 (-) False G65549
TU81987 lncRNA upstream 270925 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 310382 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 313087 32557565 ~ 32558864 (-) False AMCG00020767
TU82209 lncRNA upstream 1029698 33274176 ~ 33274444 (-) True G65753
AMCG00020751 mRNA downstream 21661 32188550 ~ 32212493 (-) True AMCG00020751
AMCG00020743 mRNA downstream 95247 32123391 ~ 32138907 (-) True AMCG00020743
AMCG00020746 mRNA downstream 111221 32122703 ~ 32122933 (-) False AMCG00020746
AMCG00020744 mRNA downstream 124738 32104730 ~ 32109416 (-) True AMCG00020744
AMCG00020745 mRNA downstream 151087 32071201 ~ 32083067 (-) True AMCG00020745
AMCG00020753 mRNA upstream 22668 32267146 ~ 32269733 (-) True AMCG00020753
AMCG00020757 mRNA upstream 45418 32289896 ~ 32291454 (-) True AMCG00020757
AMCG00020758 mRNA upstream 123640 32368118 ~ 32369718 (-) True AMCG00020758
AMCG00020764 mRNA upstream 129610 32374088 ~ 32378924 (-) True AMCG00020764
AMCG00020761 mRNA upstream 140612 32385090 ~ 32396520 (-) True AMCG00020761
TU81423 other downstream 1425308 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1703018 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2701037 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2828518 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 3437198 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 116757 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 363384 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 410656 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 641886 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1124147 33368625 ~ 33369105 (-) True G65756

Expression Profile