RNA id: AMCG00020757


Basic Information

Item Value
RNA id AMCG00020757
length 897
RNA type mRNA
GC content 0.67
exon number 4
gene id AMCG00020757
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32289896 ~ 32291454 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTGCGGCGCTGCGGTGGCCGCCTGGCTGCTCTGCGGGGCGGCGCGCTGTCTGACCCTCGACTCCAACTCCATCAAGACCGCGGGCGGACAGGGCAGCCGAGGCGGGCAGGCCCTGCGGTGCCAGGTGGACAGTGAGTGTGCCCAGGGGCAGTACTGCGCCAACCCGCGTGGGCAGGACCCTGTGTGCAGGGTCTGCCACCCGCCACGCCGCCGCTGCCACAGCAACAACATGTGCTGCCCAGGAACACTGTGTATCAACGAGGTGTGCACTCATCTGGAGGTGGGCCCAGCAGCCAGCGATGCAGAGGTGGGAGCACAGCAGGTAAACAGCACCCCCACaatgccccccccacccacccaggGCTGGACCAGCCCGCACACGCCTGTGGACAGGAGCACAAACCCAGCGGAGAAAGGCCGTGAGGGCGAGCGCTGTGTGCGATCCTCAGACTGTGGGGAGGGGCTGTGCTGTGCCCGACACCTGTGGGTGAAGAGGTGCCAGCGCCAGCCTGGGGAGGGAGAGGCCTGCACCAGACAGGGCCTGCGCAAGGCCCCCCCCAGCCGAGAGGCCTTTCAACGCTGTGACTGCAGCCTGGGGCTCACCtgccagccccagccccaggcCCAGCCCCAGGCTCAGGACTCCCCCAGGGAACGTGCTCAGCTCTGGGTGTGCCAGCAAGAGGAGGGgcaagggagaggagaggaagagggggggagggTGAAGGGGAAGGAaggggggaggaagaggaaaggGAAGGGGAAAGAGAAggtgaaggagggagggaaggagaaggggaaagagggagggaaggtGAAAGGgaaggagaagggagagagagcaggcagaggggggaagagagagacggggagagggaaggaggtgGAGTaa

Function

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0009888 tissue development biological_process
GO:0048869 cellular developmental process biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0030900 forebrain development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
K02165 DKK; dickkopf

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81873 lncRNA downstream 74139 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 102185 32186482 ~ 32187711 (-) True G65465
TU81868 lncRNA downstream 167063 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 228599 32058318 ~ 32061297 (-) True G65397
TU81708 lncRNA downstream 486104 31785515 ~ 31803792 (-) True G65337
TU81961 lncRNA upstream 66784 32358238 ~ 32365142 (-) False G65549
TU81987 lncRNA upstream 223949 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 263406 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 266111 32557565 ~ 32558864 (-) False AMCG00020767
TU82209 lncRNA upstream 982722 33274176 ~ 33274444 (-) True G65753
AMCG00020753 mRNA downstream 20163 32267146 ~ 32269733 (-) True AMCG00020753
AMCG00020752 mRNA downstream 45418 32234154 ~ 32244478 (-) True AMCG00020752
AMCG00020751 mRNA downstream 77403 32188550 ~ 32212493 (-) True AMCG00020751
AMCG00020743 mRNA downstream 150989 32123391 ~ 32138907 (-) True AMCG00020743
AMCG00020746 mRNA downstream 166963 32122703 ~ 32122933 (-) False AMCG00020746
AMCG00020758 mRNA upstream 76664 32368118 ~ 32369718 (-) True AMCG00020758
AMCG00020764 mRNA upstream 82634 32374088 ~ 32378924 (-) True AMCG00020764
AMCG00020761 mRNA upstream 93636 32385090 ~ 32396520 (-) True AMCG00020761
AMCG00020763 mRNA upstream 106981 32398435 ~ 32406525 (-) True AMCG00020763
AMCG00020760 mRNA upstream 148240 32439694 ~ 32443671 (-) True AMCG00020760
TU81423 other downstream 1481050 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1758760 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2756779 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2884260 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 3492940 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 69781 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 316408 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 363680 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 594910 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1077171 33368625 ~ 33369105 (-) True G65756

Expression Profile