RNA id: AMCG00020762


Basic Information

Item Value
RNA id AMCG00020762
length 1906
RNA type mRNA
GC content 0.61
exon number 17
gene id AMCG00020762
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32444254 ~ 32449876 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCGCAGCCGCCGTGCGGGCAGGGGGCGGTACCTGGCCTATGTCTGGCGGAGGAGCCGTCAGCTGGCAGTCGCTGTGGAGGACGAGCTGGACGCAGAGATGGTCTGCGAGAGggtTCAGCCTATTCAGTACACCACTGACTGCAAGGCCCAGAGTTTCGATGGCGTGGTGTTGGTGTCCTGGACGGTGCAGCTGCCGCAGGGTCTGCGCTGTTTGCAGGAACCTCTACAGGAATACCAGAAGgtagactctgctctgtgtgaggAGGTGAATTTGCTGAAGGTGCCAGGACTGCCCGGGGACAGGCTGGTCTTTGCATGTACAGGTCCAGTGAACCGCGACTACGATGATGTTCGGAGGTTCAGCGACGCAGCCATAAATGGAATCAAGAGAGCCCTGAAAGCTGGTATGAAGCGCCCTCTGTTGGTGTGCCCGCCTCACAGCGACTACAAGGAGAGCCCCCTGGTGGCTGTTATGGGTGCTCTGCACGCCCTGTACGTGccACTGGAGGTGCGAGAGGCTGCAGTGACGCAGAGAGCCCACAAGGCAGAGATGCTGGGTGTGTGGGTATCCACGGAGGAGCAGGGCAAGAGGATCATACAGCTGGCTACTGCGCTGGAGAGCGGACGGCTGGTGTGTCGTGACATCGGGGGCTCGGACCCGGAGCGTATGGCAGCCCCCCGTGTGGCGGAGTACGTACAGGAAGTCTTCAAAGACAGCCCTGTGGAGgtcagtGTGGTCAGCGATGTGGAGAAGCTGGAGAAAGAGTACCCCTGCCTGGCCGCGGTGAATCGCTGTGCCCACGggGTCGAGAGACACCAGGCCCGAGTGATCCAGCTGCAGTACTGTGGGGAGGGGCCGGTGCACAGCACTCTGCTGCTGGTGGGGAAGGGCATCACATACGACACCGGGGGGGCTGACATCAAGGCAGGAGGGATGATGGCAGGGATGCACCGGGACAAGTGTGGCTCCGCAGCGGTGGCTGGATTCTTCCAGGTGCTGGCGGAACTCAAGCCCAAGAATCTGAAGGTTCTGGGTGCCATGGCGATGGTTCGGAACAGCGTGGGGGCCGactgcTACGTGTCTGACGAGCTGCTGTGCTCCCGGGCGGGACTGCGGGTGCGAGTGGGGAACACGGACGCAGAGGGCCGCATGGTGATGGCAGACCTGCTCTGTGAGATGAAGGAGAAGgcAGCGTCTGAGGTTGCCCCTGAGCTGTTCACTATCGCCACCCTGACTGGACACGCCATCCGAGCCATGGGGCCAAACTACTCTattATCATGGACAACGGTCCGGCTCACCGCGCAGGCAACGCTCGGCAGTGGCAGCAGGCGGGCGACGTGCTGGGTGATGTGTTTGAGGTGTCCACGGTGCGCCGGGAGGACTACGAGTTCCACCGCGGGCGCTCCGAGTACGAGGAGCTGCTCCAGAGCAACAACCTGCCCTCCAGCGCCACGCCCCGCGGGCACCAGACCCCCGCCGCCTTCCTCACCATGGCCTCCGGGCTGCACAAGcatgGCGTGGACTCGGATGCCCCTCTGTGTTACTCCCACATCGACATCGCCGGCTCCTCCGGTCCCTTCCCCGGCGTCCCCACCGGAGCACCCATCCTCGCCATGGCAACGCGCTACATCTTCCCCCACCTCTGAGCGCGGAGACCTCCTTGCTCACTCTTCCTCACTTTGTCCATCTGTCCCTGCCTCGCTTTCATTCTATCCagcaagaaaattaaaaaagggattTCATTTTCGTTTccttctctctgcctgtctATTTCTGTGGTGTGTGATGCTGGGGTGCAGTTAGCATGTATTCCAGCACAATCGAGTGGAATAGGATGTGGTGCGATCAGTGATGTGCTGTAAGAGGACAGGCTGTGTGAGAATAAAGAGTTTTCCGACCTga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K01255 CARP, pepA; leucyl aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81961 lncRNA downstream 79112 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 228497 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 256543 32186482 ~ 32187711 (-) True G65465
TU81868 lncRNA downstream 321421 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 382957 32058318 ~ 32061297 (-) True G65397
TU81987 lncRNA upstream 65527 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 104984 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 107689 32557565 ~ 32558864 (-) False AMCG00020767
TU82209 lncRNA upstream 824300 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1355825 33805701 ~ 33852626 (-) True G65776
AMCG00020760 mRNA downstream 583 32439694 ~ 32443671 (-) True AMCG00020760
AMCG00020763 mRNA downstream 37729 32398435 ~ 32406525 (-) True AMCG00020763
AMCG00020761 mRNA downstream 47734 32385090 ~ 32396520 (-) True AMCG00020761
AMCG00020764 mRNA downstream 65330 32374088 ~ 32378924 (-) True AMCG00020764
AMCG00020758 mRNA downstream 74536 32368118 ~ 32369718 (-) True AMCG00020758
AMCG00020765 mRNA upstream 5704 32455580 ~ 32462337 (-) True AMCG00020765
AMCG00020769 mRNA upstream 43493 32493369 ~ 32495441 (-) True AMCG00020769
AMCG00020767 mRNA upstream 105810 32555686 ~ 32559096 (-) False AMCG00020767
AMCG00020768 mRNA upstream 114369 32564245 ~ 32580573 (-) True AMCG00020768
AMCG00020775 mRNA upstream 135017 32584893 ~ 32591227 (-) True AMCG00020775
TU81960 other downstream 79112 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1635408 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1913118 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2911137 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 3038618 29381315 ~ 29405636 (-) True G65000
TU82051 other upstream 157986 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 205258 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 436488 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 918749 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1772439 34222315 ~ 34239697 (-) False AMCG00020810

Expression Profile