RNA id: AMCG00020763


Basic Information

Item Value
RNA id AMCG00020763
length 3206
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00020763
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32398435 ~ 32406525 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGCGAGCTGGGAGTCAGAGGGGCTGCAGACTGTGGGCATCGTCTTCCTCGTCCTCATCTTCCTCAAACTCCTGCACCTGCTGGGCCTCATTGACATCACTGACACAGACAGCAGCGACAGTGATCTGGAGCTGTCCACAGTGCGGCACCAGCCAGAGGGCCTGGAGCAGCTGCAGGCCCAGACCAAATTCACCaagagggagctgcagtcacTGTACAGGGGCTTCAAGAACGAGTGTCCCAGTGGTCTGGTGGACGAGGAGACATTTAAGATGATTTACTCCCAGTTCTTCCCTCAAGgagGGTTAGGGTTCGACTCAGTGGCTGATGTTGCTGTTGCCCCGCCCCCTCTGCTGCAGGACTTTGTGATTGGTCTGTCGGTGCTGCTCAGAGGGACGGTGACTGAGAAGCTGAACTGGGCCTTTAACCTGTATGACATCAACAAGGACGGCTACATCACCAGAGAGGAGATGCTGGCCATCATGCGGTCCATCTATGACATGATGGGACGCTACACGTCCCCCAGCCTGCGGGATGACGCCCCCTCCGAGCACGTGGACACCTTCTTTCAGAAAATGGACCGGAACCGGGATGGAGTGGTGACCATCGATGAGTTCATGGAGACCTGCCAGAAGGATGAAAACATCATGAGCTCCATGCAGCTGTTCGAGAATGTGATCTAGAACGAGAATGTGATCTAGAACGCAGCCTAGAAGGGAAAAGACAAGGAATCAAATGAAGAGGACGTGGAAAAAACCCAGATAAAATAGAAACATAGAATATAGTCCCAGACATCATGAGCCTGCACACACTGTCCACTGCTCACCCAGTGCCTGGTCCCACTGCCCCTGCCCCCCTCTACACCCCCTCCCTTCTCATACACGCACGCACGTGCAcacgcacaggcacacacaaacacatgtgtGTATCCATGTAGAAGAGATTCCAATGGGTCAAATATCCCATGATCTccctgactggactggactgctctggactcctctccactctcttCTTTCTTCAACTCCAGAGcagcaacacagaaaacacaagtaacaaactaaacaaacacacaacccccccacgCCCCTTGTGTCTCTGTGCAAGCTGGAGGAATGACATGGGGGCGAAGTTATCATTGTGCTTGTGATTGTGAGTGTGGTTGTCATTGTGACTGTGGTTGTGATTGTCATTGTCATGGCTGTGCTGCTGTTATTGTccctgaggaagaggaggaggaagattaAACGGTTGAAGCAGAAGGTACCGATGGACTGAATGAGGATtacaaagagagacagagagagggaaagggagagaacgagagagagaggcgtCGATTTTCTCCCATGTTGTGTGACTCTTCCTCTCGCCCAGACACCCCGCCCTCTCCTCTACCAGAAGCCTACAGCTGGAGCCAGCCTCCCCATTTTCCTGAACTCAGAACACCAGTCTAACAGGCCCCTGTGTGGGCTACAGGTGTCAGCAGGGGTGGCAGTAATGGAAGAAGCCCACTTCTCAACACTTAACTCAATTGCACAACTGGGAAACTCTGtactctccacacacacactcactcacacacatacagagcaAGCGATTCCCTCACAGTGTCAGTAAGTATGCATGGAGCagccccccctcccacacacacacactgacattctctctcacacacactccctgaCACACTCGCACtaacacactcactgacacactcacacttactGACACACTCATGCTCACtgacattctctctctctcacacacacacactgacatcacACCCCTGCATGACAACACTGTTCTCCAGCTGAGGGGTCAGAACAGTGCGCACTAGATAACAATttgacattaaattatatatatatagagagagcaAGAATAAGAGCTAGAATGATTATTTAAGGAATAggaaacaaatctaaaaaaaagaaCTACAATCAATTAAGGAATGAAGATGACACTAGGTACATTTTTGCATATGAGAAGACATATCCATATATCTGCACAACTGTATTATTACTGTCTGAACTGTGCTCTTGGCTGAGTGGAGTGGAGTTCAGTGGGGCTCTTGTTCTCTTAATTACTCTATTACCTAATTAAGCTGTCTTATCAGGCGTGTACAGGACAGTTCGGAAGCTCATTTGCAGCTGCTGTATTCATGCAGCATTTTCCCTGCCTCTTTAAAGGGTACCTGTGGCGCTCTGCCATCactatgtgtgtatatatatattatactataaGATACACACATTGTGATCTGTTCAACACAGTTTGGAACAAATTTCACTCATTCCAAGAAACGACTAAGAGAGACGTGGCATCATGTCACTGAATACCTGGACTAGCGCTGGCGTGACCACTGTGTGAACAACAGCCCAGTGACCGGAAGAAGGGACTTCAGTGGGCAAATCTGTTTCACATTTCAGCACAAACTGCACATTCGACGGGAAGTGACTATGGGGCTGTGGAGGggggtgtttgtttgtgtggacCCTCCCGGGCGGATTACTCACATGTCTGCGTGTCCCAGAGCACGAGGGAGGACGAGGGGACAGGGTTCTTCTTCTCCAAGACCGACTCCACACCTGTGGGCACCGAGAATTCAGCCAGTGCGCTGCCAGGGGAGGCGAGCAGAGAGCGGACATGAGAGTCTTTAATCACcatgatttgtgtttgtatttgtcacGTTTCTGCCCCTTTAAGACATTTTACTGCAGGTACCCTTTAAACTCAGGACACACctgcccacccccaccccatctcAGAAAACACACCCATTAAtccattacatttctttgtttgatttctGTAAAATGCTGGAACAATACTCGTAGATAGGAGATGTTACTGAATTATCATTACTGATTGGCGGGCTTCTCTTACTTctaattctaataataataataataataataataataataataataataataataatgctttgtgcacaataccagctgactgattttatgtttgtttttgttttttttattaatgagaATTAGTTATTTGGAGTATTAGTACGAACTCAGTGAACTGTAGTGACTGTGAGCAGGGAGTCAGTGTTTCTGAGAGACTGCATTGTCTGCAGAAATGTCAGTGAAAGAGAGGATGATggagagggaaggaaggagagagatgggaagaggggtgagggatagagagagagagagaaagggatgcGTAGGGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81961 lncRNA downstream 33293 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 182678 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 210724 32186482 ~ 32187711 (-) True G65465
TU81868 lncRNA downstream 275602 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 337138 32058318 ~ 32061297 (-) True G65397
TU81987 lncRNA upstream 108878 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 148335 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 151040 32557565 ~ 32558864 (-) False AMCG00020767
TU82209 lncRNA upstream 867651 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1399176 33805701 ~ 33852626 (-) True G65776
AMCG00020761 mRNA downstream 1915 32385090 ~ 32396520 (-) True AMCG00020761
AMCG00020764 mRNA downstream 19511 32374088 ~ 32378924 (-) True AMCG00020764
AMCG00020758 mRNA downstream 28717 32368118 ~ 32369718 (-) True AMCG00020758
AMCG00020757 mRNA downstream 106981 32289896 ~ 32291454 (-) True AMCG00020757
AMCG00020753 mRNA downstream 128702 32267146 ~ 32269733 (-) True AMCG00020753
AMCG00020760 mRNA upstream 33169 32439694 ~ 32443671 (-) True AMCG00020760
AMCG00020762 mRNA upstream 37729 32444254 ~ 32449876 (-) True AMCG00020762
AMCG00020765 mRNA upstream 49055 32455580 ~ 32462337 (-) True AMCG00020765
AMCG00020769 mRNA upstream 86844 32493369 ~ 32495441 (-) True AMCG00020769
AMCG00020767 mRNA upstream 149161 32555686 ~ 32559096 (-) False AMCG00020767
TU81960 other downstream 33293 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1589589 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1867299 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2865318 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2992799 29381315 ~ 29405636 (-) True G65000
TU82051 other upstream 201337 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 248609 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 479839 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 962100 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1815790 34222315 ~ 34239697 (-) False AMCG00020810

Expression Profile