RNA id: AMCG00020765


Basic Information

Item Value
RNA id AMCG00020765
length 2229
RNA type mRNA
GC content 0.64
exon number 18
gene id AMCG00020765
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32455580 ~ 32462337 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACCTGGGGGCTGGCGTTGCGGAGGCGTGTGAAGCAGGTGGCGCCGCTCCTGGGCACCTTCAGACCGAGTGTTGGGCGCTGTTGCCCTCACTGCACCCCCGACAGCGTGGCTCTAAAGCTGCTGCAGTCCCACCCCTCTCTGGGTTTCCAGAACCTGTTGTGTGTGACTGAGAAACAAACACGGTATCGGGGCTGGCTGGTGCgcaggctgtgctgtgtgctgctggTGGGGGGTGGCAGGGTGCCCCCCAGTGACGCCACTCTCACTTCACAGAGTGTATTGCAGAGCCACAGGTCGGGGGGTGGGGAAGGAAGGGAAGGGGGGGCAGGGGTGCAGTCTCTCCTCTGCCCACAGGGGGGCGCCAGTGGAGTGGCCACCAGGGAGCAGGCTGAGCACATAGTCTCCTCCATCAGCACCTGCTTTTGCCCCTGGCTGCTCcggGTGCTGTGCTGGGTGCTGTTGAAGGTGCTGGGCCACCTGCTGTCCAGCGTCCAGCTCAACCTCAACCAGCTGGCCGCCCTGCATGAGGCCAGCAAGCGGGGCTCTCCTCTGGTCCTGGTGTCAGTGCATCGGTCCAGTCTGGATTACGCCCTGCTCCCGCTGGCTCTGTTCTGCCACAACCTGGGAGTGCCCTACAGCGTTGGCCCGCCCAGCCTGGACAGCACCTGGCTGAGGTTCATCCTGCAGAGGCTGGGAGTGATCCTCACTCCGCAATGCCCAATGGGAGAGCAGGGATCCATGACTGACAGCCTGTATCACGCAATCATGCCCTGTTTTGTCGGTGAGTTGCTGAGAGAGGGGAACAGCATGCTGATCTTCCTGGAGGAGGCGTGTCCCTCCTCTCGCCGCCCCTCCCCCCGGGGGGCACAGTGGCTGGCGTGGGTCCGAGGGGCAGTGCGGGCGGGGGCCGTAAGCGACGTCGCCATAGTGCCCGTGGGCGTGGCCTACGACCGCACCGGGCGAGAGACTGGCACCCAGGTACAGACCGGCACAGCTACCACAGGGGAGGTGTACTGGAGGGTGAAGTCTCATGAAATCGAGAATTTTGTCTTTGGAGAGTCCGAGTCTCTGTTTGCGGAGCAGGCCCAGCCCTGGTTGCTGCCCCCCACCTCCTGCCCTGAGCTGCCCCAGGCAGAGCGCCACCTAGTGATCAGTCTGACCACTCACCTCCTGCACTTGGCTTCTTCCTATACCGCGGTGACGTCGACTGCTATTGTTTCCTGTCTGCTGCTTCACAAACATCGCAAGggaGTATGTGTGTCCATGCTGTGTGCTGATTTCTCCTGGCTCTTGGAGGAGGTGCTGTTCCGGGGCCGAGATGTGGGGTTTGGGGGCACCGTGGGGGAGGTGCTGACCCATGCCCTGTCCCTGCTGAAGGGCTGCCTGGTCTTGGGGTCCCCCCCCAGCGGCGGGCCCCCAGTCATTGTACCCAGGGCCGGCCCCCATGCGGCCCTGACACTGTCCGCCCACTGTGAGGTGCTGTGTAGCGTGTTCAGCCTGGAAGCCGTGGGAGcgTGTGCGGTCAGTGCTATGATGAGGGAAGTTGTGAGCTGTGCAGGGGAGGAGGACGGTGACGTCGTGGTGGCGCTGTGTGAGGATCAGCTGACCGAGAGAGCCCTGCAGCTCTGCCACCTGCTGCCACGGCTGCTGCTGCCTccttGCCAGTCTGCCTGCGGTTTTGCTCAGGATGCTGTGGACAGTCTGGTGCGCTGTGGGATACTCACCATGGAGGAGttaccgggggctggggggctgtgTGACCTGAGGCACAGACGGGCCCCCCTGCAGTGGCGTTCGGTGGACGAGGGGGAGGGCAGCGACTCCGACTGTGATGACCCCACCCCGCCACGCTGCTACAAgctcAGCTGTCCCAGGAAGTGTCCGGAGCTACTGTTCGTGCTGTGCAGTCTGCTGAGCGGTCAGCTGAGGGCGCTGTCCTGGAGCACCGACGCCCTGCCCCTGCTGCAGCCCCCCAGGCCAGAGGCGGAGTGTGTTGCCCGGGTGCACAGGCTCCTGCAGGACCGAGCGCAGGCCGAGAGGGGCCACTACGAAAGCTCCTCTCTGCAGATGGCAGCCTCTGCGGTCCACACCTTCACTGACCTGGGGGTGCTGACAGTGCAGTGCGGTGTGGACGGGCGGCAGGCTCTGGGCCTCAGCACTGCGTTCCAGGATGAGGCCCCACGCTTCAGGCTGCACAGCTTCATTGCACAGTTCCTGTTCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81961 lncRNA downstream 90438 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 239823 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 267869 32186482 ~ 32187711 (-) True G65465
TU81868 lncRNA downstream 332747 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 394283 32058318 ~ 32061297 (-) True G65397
TU81987 lncRNA upstream 53066 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 92523 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 95228 32557565 ~ 32558864 (-) False AMCG00020767
TU82209 lncRNA upstream 811839 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1343364 33805701 ~ 33852626 (-) True G65776
AMCG00020762 mRNA downstream 5704 32444254 ~ 32449876 (-) True AMCG00020762
AMCG00020760 mRNA downstream 11909 32439694 ~ 32443671 (-) True AMCG00020760
AMCG00020763 mRNA downstream 49055 32398435 ~ 32406525 (-) True AMCG00020763
AMCG00020761 mRNA downstream 59060 32385090 ~ 32396520 (-) True AMCG00020761
AMCG00020764 mRNA downstream 76656 32374088 ~ 32378924 (-) True AMCG00020764
AMCG00020769 mRNA upstream 31032 32493369 ~ 32495441 (-) True AMCG00020769
AMCG00020767 mRNA upstream 93349 32555686 ~ 32559096 (-) False AMCG00020767
AMCG00020768 mRNA upstream 101908 32564245 ~ 32580573 (-) True AMCG00020768
AMCG00020775 mRNA upstream 122556 32584893 ~ 32591227 (-) True AMCG00020775
AMCG00020777 mRNA upstream 131933 32594270 ~ 32598433 (-) True AMCG00020777
TU81960 other downstream 90438 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1646734 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1924444 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2922463 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 3049944 29381315 ~ 29405636 (-) True G65000
TU82051 other upstream 145525 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 192797 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 424027 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 906288 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1759978 34222315 ~ 34239697 (-) False AMCG00020810

Expression Profile