RNA id: AMCG00020766


Basic Information

Item Value
RNA id AMCG00020766
length 1977
RNA type mRNA
GC content 0.61
exon number 10
gene id AMCG00020766
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32520199 ~ 32528034 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAAGCCACAGAAGTTGGCTGTGGTGGCTCCATGCTGCCTCTCCAGTCCTTCAGTGTTCTCTTCCCCCTTTGAAAAGTTGTACCCAAGCAAATTCTCCTCCCCCACAGTGACTGCCCTGCCTGTGAATGGAGTCTCCAGGAGGGCCCGGCTCAATGGAGGGGccCTGGCACCGCTGCAGCGACAGAGTGCTGCTGAGGACCTGCATGCTGCCCTGGAAGGCATCGATGCCATCCACAATGCCCTGTTCAACAACCTACTCTCCCAGCCGAGCAGACCGCCTGGAACTGGGGAGCATGGCATGGGTCATGGCTCCGGCATGGGTCAGGACGCTGAGGGTCACGGCTCCGGCATGGCGGCCACAGATGGCCCCTCCACTGGGACTGCCCAGAGCAACATTGCCCTGCTGGTGAACTGGCCCACAGGTAGCCCCTCCACTATGCCTGACCTGCTGGGGAATGGGCCCTCGGCCAGCCCCTCCACTGGGACTGCCCAGAGCAACGTTGCCCTGCTGGTGGACTGGCCCACAGGTAGCCCCTCCACTATGCCTGACCTGCTGGGGAATGGGCCCTTGGCCAGCCCCTCCACTATGACTGAGTCTCTAGTGCCTGGCAGGGCCCTGAATCCAACTGAAATGCAATCCACTGCTTCCGAGCCCCACACCACTGCTGTGCTGCCCCAGTCCACTGCGGGTGGCACCAAGCACTCCCGCTCTGCCCTGATGAGTGTCCACTATGGACACGCCCATGATCATCTCCAGCTGGCCTCCTTGAACAGCCTCTTCTGTGACTTTGAGATGGACCTGTGTGCCTGGACTCCATCAGGGATGGGCCACTCTGACTGGCTGCTGCACCGCGAGAGGCCAGATGCCTTCGAAGGTGCGGCGGTCACCGGGGAGGACGGCTGCCGCAACAAAGCAGGGCAGTACCTGTACATGGAGTCTTTATACCAGCACAGCCAGGGTTACACCGCAGAGCTGCGCAGCTGGGAGCTGACTGGCGCGGCCTGCCTGTCCTTCTGGTACAGTGTGTTCGGGGCTGGAGTGGactCCCTGTCAGTGTACCTGGTGTACTCGGAGAGCTCTCTGGACAGGCGGCTGGTCTGGTCTGACGGTGGCAAGGAGACCCGGCAGTGGTACCTGGAGACTCTGGATCTGGCAGTCACTGGGGCACAGAAATATCGGGTGGTGTTTATAGGTACTATTGGCAATGGTTGCAACGATGCTGTGCTGGATGATCTGGAGGTGTGGGGCCAGCCATGTGCCAGTGTGTCTAGATCCACCTCTAAGACTGCCATCACGACTCCTTCCATGACTGCCAATGGGGGTAACTTTAGTACCACTACTGCTTCTAGTTCTACCAATGGGGGTAACTTACCTGCCACAGAAAATGGAACTGCTTCAGTCACTGCCAACCTTGCCACCCTCCTGCCAACTACTGCCAGACTGGGTAATGCCACCTCTGCTCCCCCtggctctgtgctgctgtacTGCAGCTTTGAGTCCTCGCTATGCGGCTGGACCCAGTTCCAGGGTGATGACTTTGACTGGCGCCTGCACCGGGAGAGGGAGCTGACGGCAGGGGTGCGCGAGAGCGGGGCAGGCTGCAGAAACCTGGGAGGATGGTACCTGTACATTGAAGTGATCTCCCACAGGAAGACTGGTGATCGGGCAGTGCTGGTGAGCCCCCCCCTCAGTGGCTCAGTGTGCCTGAGCTTCTGGTACAGCCTGCTGGGCCAAGGAGTGGACTCCCtcagtgtgtatgtgctgtTCTCGGACACGCCTGAGCTCCAGTACAGGTTGTGGGAGAGGCAGGGCTCCAGTGCCCGGCTGTGGGCCAGAGCAGAGGTGCCGCTGATTGTGGAGCTGGACAGGAGCTTCCAGCTGGTGCTGGAAGGACTGCTGGGGGAGCAGCCCTGTGGTGACGCGGCCCTGGATGAGCTCATGGTTGTGAGGGGCCACTGTGGGGGGGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81944 lncRNA upstream 75555 32443881 ~ 32444644 (+) True G65534
TU81909 lncRNA upstream 212480 32307438 ~ 32307719 (+) True G65503
TU81854 lncRNA upstream 250742 32268626 ~ 32269457 (+) True G65452
TU81835 lncRNA upstream 251998 32182362 ~ 32268201 (+) True G65437
TU81997 lncRNA downstream 35396 32563430 ~ 32585714 (+) True G65579
TU82017 lncRNA downstream 101689 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA downstream 101689 32629723 ~ 32686320 (+) False G65594
TU82043 lncRNA downstream 213166 32741200 ~ 32744735 (+) False AMCG00020783
TU82117 lncRNA downstream 351065 32879099 ~ 32882118 (+) True G65670
AMCG00020759 mRNA upstream 65366 32450177 ~ 32454833 (+) True AMCG00020759
AMCG00020755 mRNA upstream 157537 32357858 ~ 32362662 (+) True AMCG00020755
AMCG00020756 mRNA upstream 164370 32346662 ~ 32355829 (+) True AMCG00020756
AMCG00020754 mRNA upstream 205817 32310490 ~ 32314382 (+) True AMCG00020754
AMCG00020749 mRNA upstream 230860 32281581 ~ 32289339 (+) True AMCG00020749
AMCG00020770 mRNA downstream 12905 32540939 ~ 32551381 (+) True AMCG00020770
AMCG00020771 mRNA downstream 77737 32605771 ~ 32608552 (+) True AMCG00020771
AMCG00020772 mRNA downstream 123698 32651732 ~ 32656484 (+) True AMCG00020772
AMCG00020783 mRNA downstream 179899 32707933 ~ 32742239 (+) True AMCG00020783
AMCG00020782 mRNA downstream 239298 32767332 ~ 32770643 (+) True AMCG00020782
TU81856 other upstream 241227 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 330818 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 425013 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 655493 31863383 ~ 31864706 (+) True G65343
TU81555 other upstream 1035729 31459502 ~ 31484470 (+) True AMCG00020715
TU82011 other downstream 64448 32592482 ~ 32594454 (+) True G65590
TU82142 other downstream 418697 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 579839 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1426772 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1531077 34059111 ~ 34059465 (+) True G65830

Expression Profile