RNA id: TU82055



Basic Information


Item Value
RNA id TU82055
length 225
lncRNA type sense_over
GC content 0.70
exon number 2
gene id AMCG00020767
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32554860 ~ 32559096 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCTGACCCTGCTGCGGTCGGGCCGGCTGGCCACCCTGGTGGTGCTGGACGAGGGGAGCCGCTGCCTGGCCGAGCTGAGAGCGGAGAGTCTGGGCAGGATGCTCCTCAGCGCCCTGAGCGCAGAGCTGGGCCCCGGAGAGACGCGCGTCTGCTTCCTGCGAGGTGGCTTCGAGGGCTTCTTCTCGCTGTGGCCGCAGCTCTGTGTGAAGTCCCCGGGCCTGTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82054 lncRNA downstream 1008 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 41948 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 192423 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 341808 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 369854 32186482 ~ 32187711 (-) True G65465
TU82209 lncRNA upstream 715312 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1246837 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 1272871 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 1279383 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 1402313 33961177 ~ 33962191 (-) True G65813
AMCG00020769 mRNA downstream 62124 32493369 ~ 32495441 (-) True AMCG00020769
AMCG00020765 mRNA downstream 95228 32455580 ~ 32462337 (-) True AMCG00020765
AMCG00020762 mRNA downstream 107689 32444254 ~ 32449876 (-) True AMCG00020762
AMCG00020760 mRNA downstream 113894 32439694 ~ 32443671 (-) True AMCG00020760
AMCG00020763 mRNA downstream 151040 32398435 ~ 32406525 (-) True AMCG00020763
AMCG00020768 mRNA upstream 5381 32564245 ~ 32580573 (-) True AMCG00020768
AMCG00020775 mRNA upstream 26029 32584893 ~ 32591227 (-) True AMCG00020775
AMCG00020777 mRNA upstream 35406 32594270 ~ 32598433 (-) True AMCG00020777
AMCG00020780 mRNA upstream 40113 32598977 ~ 32600643 (-) True AMCG00020780
AMCG00020774 mRNA upstream 49985 32608849 ~ 32610708 (-) False AMCG00020774
TU81960 other downstream 192423 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1748719 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 2026429 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 3024448 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 3151929 29381315 ~ 29405636 (-) True G65000
TU82051 other upstream 48998 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 96270 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 327500 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 809761 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1663451 34222315 ~ 34239697 (-) False AMCG00020810

Expression Profile