RNA id: AMCG00020772


Basic Information

Item Value
RNA id AMCG00020772
length 2002
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00020772
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32651732 ~ 32656484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAGTCGCTGCTGCCGGTGCTGACGGTGGCTGCGTCAGAGCTCTGTCTCCGCTATAAAAGCGGGTAGCTGGGCTGGAGCTTGACTGAGAGCCAAGCGGCTGaacagaagcagcagcagcagcagcagcagcagcagcagcactggtcGGTGGCAGCTCCCTCCTCTCGTCTCACTCCTGTGGTTGGAACCCTGCGAGTGCCCGCCTTGGTGCCTCTCGGCCCTCGCCTGCCTTCGCCATGAGTTACGACCCCTACTTCTCCAGCTCCTACAAGCGCCGCTATGTGGACTCAGCCCCCCGGCTGGTGCACGTCTCCGGGCTGCGCAGTGCCGGTGCTGGCGGTGCAGGAGGGTATGCCCGCTCCGTGTACTCCAGCCACTCAGCGCCGCTGTCCACCATGTCCTCGGTCAGCTCCCGTCACCACACCACCCAGCACCACCAGCTGCACCGCGGCTATGGCATCTCGGCGTCCTCAGCCTCCAGCCTCCTGCAGGCCGCCGACCTGGACCTGAGCCAAGCAGCGCAGGTGAGCAGCGAATTCCGGGTGGTGAGGACCCAGGAGAAGGCCCAGATGCAGGACCTGAACGACCGCTTCGCCAGCTTCATCGAGCGGGTGcatgagctggagcagcagaaTAAGGTGCTGGAGGCCGAGTTGATGGTGCTGAGGCAGAGGCACGTGGAGCCTTCCCGCCTCAAGGCCCTCTACGAGCAGGAGATCCGGGAGCTGAGGGCGGCCGTGGAAGAAGCCCGGGGTGAGAGGCAGGCGGCGCAGAATGAGCGGGAAGGGCTGGAGGACGCCCTGAGGGGGCTGCAGGGCCGCTATGAGGAGGAGGTGCTGAACCGGGAGGAGGCAGAAGGCCGGTTGATGGACGCACGCAAGGGAGCGGACGAGGCGGCGCTGGCCCGGGCCGAACTGGAGCGGCGGGCCGAGACGCTGCTGGACGAGATTGCCTTCCTGAAGCGGGTGCACGAGGAGGAGATCGCCGAGCTGCAGGCGCAGGTGCAGTACGCCCAGGTGTCCGTGGAGATGGAGGTGGCCAAGCCCGACCTGTCCGCCGCCCTGCGCGACATCCGCTCGCAGTATGAGAAGTTGGCGACCCGCAACATGCAGGCGGCCGAGGACTGGTTCAAGAGCAAGTTCAATGTGCTGACCGAGACCGCTGCCCGCAACACCGATGCCGTGCGCACAGCCAAGGACGAGGCCGGGGAGTACCGCCGACAGCTCAAGGCCCGCTCCCTGGAGATCGAGGCCTGCCGGGGCATGAACGAGGCCATGGAGAAGCAGCTGCAGGACATGGAGGACAAACAGAACCGGGAAATCGTCGCCATGCAGgAGACCATCAGCCAGCTGGAGAATGAGCTGAGGGCCACCAAGAACGAGATGGCGCGCTACCTGAAGGAGTATCAGGACCTGCTGAACGTCAAGATGGCCCTGGACATTGAAATCGCTGCTTATAGGAAGCTGCTGGAAGGCGAGGAGACGCGGTTCAGCGTGGGAGGTGGGGTGAGCGCGTTCTCACAGAGCGCTTACTCACAGAGTGCGTTCTCCCAGAGTGCCCCCCCACCAGGCCTGTACGGCCGCTCGCTGTTCTCCCTGCAGAGCAGCTCCATGGGCAGCCTCGGCTCCCCCTACATGATGGGCAGCAGACTGTTCACCTCCAGCTACTCCTCCAGCCACGCCCCCGAGGTCGAAGAGGTCATCCGCGCCAGCCAATCCGAGCAGGCCGAGGCAGCCCCGCCtgctgaggaagaggaggaggaggaggagcagaaggaggaggaagaggaggaggagcagaaggaggaggaagaggccGGAGAGGGTGAGGAAGAGGCAGAGGAAGGAGAGGCTGAGGACGAGGGAGAGAAGGCAGAAGCAGAGGAAGAGGGTCAAGATGAAGGAGGAGAAGACGAGGCCAAAGAAGAAGAGGgcggagaggaagagaaggaggaggagaaaggagcagagaaggaggagaaacCCAAGGAAAAGAAATGA

Function

GO:

id name namespace
GO:0005883 neurofilament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04572 NEFL, NF-L; neurofilament light polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81997 lncRNA upstream 66018 32563430 ~ 32585714 (+) True G65579
TU81944 lncRNA upstream 207088 32443881 ~ 32444644 (+) True G65534
TU81909 lncRNA upstream 344013 32307438 ~ 32307719 (+) True G65503
TU81854 lncRNA upstream 382275 32268626 ~ 32269457 (+) True G65452
TU81852 lncRNA upstream 397871 32234150 ~ 32253861 (+) True G65450
TU82043 lncRNA downstream 84716 32741200 ~ 32744735 (+) False AMCG00020783
TU82117 lncRNA downstream 222615 32879099 ~ 32882118 (+) True G65670
TU82306 lncRNA downstream 1393510 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 1405668 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 1565862 34222346 ~ 34261929 (+) True G65873
AMCG00020771 mRNA upstream 43180 32605771 ~ 32608552 (+) True AMCG00020771
AMCG00020770 mRNA upstream 100351 32540939 ~ 32551381 (+) True AMCG00020770
AMCG00020766 mRNA upstream 123698 32520199 ~ 32528034 (+) True AMCG00020766
AMCG00020759 mRNA upstream 196899 32450177 ~ 32454833 (+) True AMCG00020759
AMCG00020755 mRNA upstream 289070 32357858 ~ 32362662 (+) True AMCG00020755
AMCG00020783 mRNA downstream 51449 32707933 ~ 32742239 (+) True AMCG00020783
AMCG00020782 mRNA downstream 110848 32767332 ~ 32770643 (+) True AMCG00020782
AMCG00020786 mRNA downstream 154809 32811293 ~ 32824902 (+) True AMCG00020786
AMCG00020789 mRNA downstream 261136 32917620 ~ 32923763 (+) True AMCG00020789
AMCG00020791 mRNA downstream 506931 33163415 ~ 33179686 (+) True AMCG00020791
TU82011 other upstream 57278 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 372760 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 462351 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 556546 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 787026 31863383 ~ 31864706 (+) True G65343
TU82142 other downstream 290247 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 451389 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1298322 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1402627 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 1748050 34404534 ~ 34411620 (+) True AMCG00020820

Expression Profile