RNA id: AMCG00020774


Basic Information

Item Value
RNA id AMCG00020774
length 968
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00020774
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32607862 ~ 32610708 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTGACGTAATTCTAAGCCAACTTCCTGCTCGGACAGCGTGTGTGTCCCGCCGTTTAGTCAACTAAGAAGTCAATCAAAAAACTAATATTACCAGTTTCATTTGACTATTTATTGATTGAAAACCACTCCGGACTGCAAAATGAGCAAAGCGCACCCTCCAGAGTTGAAGAAGTTCATGGACAAGAAGCTGTCGTTGAAGCTGAATGGTGGACGGCACGTCCAGGGCATCCTGCGCGGGTTCGACCCTTTCATGAACCTGGTGATGGATGACTGTCTGGAGCTCGCCCAGGGGGGGCAGCAGAACACCATCGGCATGGTGGTGATCAGAGGAAACAGTATAATCATGCTGGAAGCCCTGGAGAGAGTATGAgggggtgcgtgtgtccctgaaGTGCAGCCCCACAGCCCCACATGGAAGAGGAGTCCAAGCCACAGCCGCAATTCCAGCCCACTATGCAGCTGCCAATCACCTGCCCAGGGAAATCCCCAACCCGGGGTGCCAGCAATCTAACCACACTCACGTTTTGAACAGTTCCTACCCAGGCGGTCtctcctggtcctgcagagccccCCCAACCCCATTGAATCGTAATTCATCAGCACAGTGGGCTCGAGAAGAAAAgatgaaattaaacaaagtgtACCAGTCTGGGAACAACAATACTCCACGTGTTCATTGCCCCCCAGATCAGAGCGACTACATGGGAACTCTGCCCTCCCCTCGAATCCGATCGCAATGTGCCCCATCGTAGTAGAGCAGCAGAGTCATAGTTCATGATTGGCAGGGAGCTCAGAGTTTGAATTTGGCCAAGgcctgtgtgggtgtgtttcgATCGGCTGTTTGAGGTGCTGGGCTGTGCTAGGTGttcttttacatttgttttttgttttgttttgggtatTGAGGGTAGCATTATCTGTTAATAattcaagattatttttttgtatgtgaaatGTTTGCCACGT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0004148 dihydrolipoyl dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 49985 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 52292 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 93232 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 243707 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 393092 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 663468 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1194993 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 1221027 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 1227539 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 1350469 33961177 ~ 33962191 (-) True G65813
AMCG00020780 mRNA downstream 8206 32598977 ~ 32600643 (-) True AMCG00020780
AMCG00020777 mRNA downstream 10416 32594270 ~ 32598433 (-) True AMCG00020777
AMCG00020775 mRNA downstream 17622 32584893 ~ 32591227 (-) True AMCG00020775
AMCG00020768 mRNA downstream 28276 32564245 ~ 32580573 (-) True AMCG00020768
AMCG00020767 mRNA downstream 49753 32555686 ~ 32559096 (-) False AMCG00020767
AMCG00020776 mRNA upstream 783 32611491 ~ 32613957 (-) True AMCG00020776
AMCG00020781 mRNA upstream 9066 32619774 ~ 32624594 (-) True AMCG00020781
AMCG00020779 mRNA upstream 19359 32630067 ~ 32640235 (-) True AMCG00020779
AMCG00020778 mRNA upstream 32216 32642924 ~ 32644550 (-) True AMCG00020778
AMCG00020773 mRNA upstream 58203 32668911 ~ 32674378 (-) True AMCG00020773
TU81960 other downstream 243707 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1800003 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 2077713 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 3075732 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 3203213 29381315 ~ 29405636 (-) True G65000
TU82083 other upstream 44426 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 275656 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 757917 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1611607 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 2198066 34808774 ~ 34814169 (-) False AMCG00020836

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU234849 True 207 lncRNA 0.30 1 CI01000049 780774 ~ 780980 (-)
eurasian perch (Perca fluviatilis) TU73793 False 464 TUCP 0.47 4 NC_053116.1 35062877 ~ 35065952 (+)
tiger barb (Puntius tetrazona) TU234849 False 586 lncRNA 0.39 4 NC_056721.1 17426743 ~ 17428031 (+)
mexican tetra (Astyanax mexicanus) TU179338 False 492 lncRNA 0.42 4 NC_035911.1 17506725 ~ 17509815 (+)