RNA id: AMCG00020780


Basic Information

Item Value
RNA id AMCG00020780
length 408
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00020780
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32598977 ~ 32600643 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGCTAAGagtctgtttgtctctctcctcctcggAGTCCTCCTGGCCCCCATCTTCGCTGAAGAGGGGGTCATCGCCTACAGGATGTTTGACAGCCAGTCGTGTGTCCTGGTCAGAATGAACAAGGCGACATTCCCCAGTCTGGACAAACTGAAGCAGATACTGCAGGAGCAGAAGagcGGGAAGCAGTCGGCCCCTGCCCCTCCTCGTCAGTACACCGTGACCCCCGCCCACATCAAGGACCTGTCTGGCCTGGGGGCCCCGGTGAACACACTCTGTCGCGACCTGACCGTCAACTGGGCACAGGAGCAGATTGgtaACATGCTGTACGGAGATGCTGGTGCCTGCCTCAATATCAACCTCCTCTTCCTGATCGACGTTAACCTATGTGGACACATCGGAGTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 40113 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 42420 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 83360 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 233835 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 383220 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 673533 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1205058 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 1231092 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 1237604 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 1360534 33961177 ~ 33962191 (-) True G65813
AMCG00020777 mRNA downstream 544 32594270 ~ 32598433 (-) True AMCG00020777
AMCG00020775 mRNA downstream 7750 32584893 ~ 32591227 (-) True AMCG00020775
AMCG00020768 mRNA downstream 18404 32564245 ~ 32580573 (-) True AMCG00020768
AMCG00020767 mRNA downstream 39881 32555686 ~ 32559096 (-) False AMCG00020767
AMCG00020769 mRNA downstream 103536 32493369 ~ 32495441 (-) True AMCG00020769
AMCG00020774 mRNA upstream 8206 32608849 ~ 32610708 (-) False AMCG00020774
AMCG00020776 mRNA upstream 10848 32611491 ~ 32613957 (-) True AMCG00020776
AMCG00020781 mRNA upstream 19131 32619774 ~ 32624594 (-) True AMCG00020781
AMCG00020779 mRNA upstream 29424 32630067 ~ 32640235 (-) True AMCG00020779
AMCG00020778 mRNA upstream 42281 32642924 ~ 32644550 (-) True AMCG00020778
TU81960 other downstream 233835 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1790131 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 2067841 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 3065860 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 3193341 29381315 ~ 29405636 (-) True G65000
TU82051 other upstream 7219 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 54491 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 285721 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 767982 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1621672 34222315 ~ 34239697 (-) False AMCG00020810

Expression Profile