RNA id: TU82043


Basic Information

Item Value
RNA id TU82043
length 2360
lncRNA type sense_over
GC content 0.43
exon number 3
gene id AMCG00020783
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32707933 ~ 32744735 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAATCAGATTTTTTGGTTTCACTTCCCTCCAGAGCGATGGGGAGGTGACCTCTGACATCCCGGGCACGCCTCCGCCCATGCCACCAAAAAGACACCCTCTGGACAGCGACAGTCCACGGAACTCGGTGGAGTTCGTTCCCCGGTTGCCGACCAAAGGGGACCACAGACCCCCCCCACCGCCTCCCAAGGCCAGGAAGTCTGTGATCCCGTCGTTCGAGCACAGCCCACAGTGACGGGTCAGCCTCTGTCAGGACAGCGGCTGCGTCAGGATGAGAGCAGAGGGTGATAGTGGAGCAGCACCAAACCCCAAACCCCCAACCCAATGCCATTCCTTTCGCTCATCACCCCCAAAGTCGAGGTTAAGGAGAagagaaggggggtggggggttggcgTCCTTATTAGGGGAGGACACACCTTCAAAATGCAGCCCTGGAAGACGATCTGCCGGAGAATCGGACTGGGTCCAGTTTAGAAACCCAGCAGGTCCAccatttcagtttgtattttctgttgatTCCCCAGTTTAATcactttcaaaagaaaaaaataaggcaaTTATTGACTGTCCCGAGACAGTGTCAGATAAGTAATGAAATGCAtcctgtatatatactgtactatacataGATAGGTTAAATACTGGGcaaagtcttttttttgtaaGCTCTTTGGCTTTCAGTATTCCGGAATGAATTGTCTGAGCTGAGTATTCCGTATCTGTCCGGAACAAAACTCAATGGAATATCTACCTGACCTGTTTTACAAAAAGCCTGGAGGGACGTGGAAATTTGCAGAACTACTGTagaatatgtgttttaaatactgtCAGAGGATCCCAGACACAGCAAAAATGTGGGccacaaagaacaaaaacaaaacaaaaaacagggcAAACCAGGACACAAACAATTTGAAACTTTGACCCATAAGCGAATTCCAAGCCCACTGCTCGAGGGTGGGTTTCCATTATTGAAGTACAAACAGAAAGCCGCAGTGGATGGGTCGAGCTTTTGATTTGAATCCGGGGCCAAACCTTTCTTTCAAGAGTTGGAATTCAAGGCCCACTGCAGGCTGTCACTGTGGAGAGCAACGCAATACATTCTCGTGTGCAATATGCTGTATCTGTCAGATTTAAACTGCAGTCGAACAGATTTGGAGCTGAGAGGCATAAAAACATGGAGAAAAGTGAAATAGTGTGAAGTGGCATTTCTGTGGTTTGACCCTTATAACCCAGCATGGTGTATGTGTCACCTGCAGAGGCCTGGCAGTTTTGGATCATCTATTTGTGCCAAGCCTGTTTTTAATGtaggcaatatatatatgtgtcatGCTGGGTTCTTAGGAGTTAATCACACAATTCTAGGCTTCAGCTACACGTATGGTAAAACAGTAAGACGATAGTGGATTTGTGACGTAATGGAAGGCACTTTACTTTCCTACTCGAGAAACTTACCACGAGATACATTTTCTGGAGGGAGAGGGTCAGTAAATCACactaaaatgttatttgaattGGTTCTCTATTGCGATACTGCTTAAGTGCTTTAATTACCTCATTCATTAAACACAGATAATCAAGACATGCACTGGAtttcataaatgtaaatgtgattttatttttgtgtttttaaggagaagaaaatatatatgtacagaatTACTACTTTGtatgtgcgtgcatgtgtgtatgtatgtgtgcgaGCGCAAGTGTTTTTGTCTCTGTGGTGCCAGTGTCAGAGCCCCTTGGATGCAAGGTGTCTCCTGTCAATCACTGTAAAACTGTTCGCTTCAGACTTGAGAATCATTTCCAAGAATGCAGcatctccttttatttttatgattttatttgaaatgtttacagCTCTGCGTTCTTCATCACCGCACTGCAGACCAAGGAACACGAGAGAGCAAGCAATCTCTTGCAATTGGTCGGACGTCAACAGACAAATCAAAGACACAGAGACCACGATAAAAGACTGAACCACAAAAAATCCTGCTATTTATAGAAGGGATTGGGCGaggcgttttgtttttgttttgttcggtTTTCTTTGCTCTTTTGCTTTAACTGTATGCACCTGTGCCGTTGTTTCAGTGTGGTTAGACACTGCAGATGGGCTTTGTAGTGCGTTCTTGGGAGTTTTTTAGCTAAAGGGACCAAAATTAACCAAACCCTCCTGCAGggattctttttgtttttaccatggtgacagaaaacagaaatatggTACTGTGAGGACAGAGGATTCACTTCCTGCTTTGGGAAAACCATGTCAAACACTGAatactttcattattattattatttttttttttttcttaactgtcaaactatcaataataaaataatttaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82017 lncRNA upstream 54880 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA upstream 54880 32629723 ~ 32686320 (+) False G65594
TU81997 lncRNA upstream 155486 32563430 ~ 32585714 (+) True G65579
TU81944 lncRNA upstream 296556 32443881 ~ 32444644 (+) True G65534
TU81909 lncRNA upstream 433481 32307438 ~ 32307719 (+) True G65503
TU82117 lncRNA downstream 134364 32879099 ~ 32882118 (+) True G65670
TU82306 lncRNA downstream 1305259 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 1317417 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 1477611 34222346 ~ 34261929 (+) True G65873
TU82362 lncRNA downstream 1495154 34239889 ~ 34267100 (+) True G65877
AMCG00020772 mRNA upstream 84716 32651732 ~ 32656484 (+) True AMCG00020772
AMCG00020771 mRNA upstream 132648 32605771 ~ 32608552 (+) True AMCG00020771
AMCG00020770 mRNA upstream 189819 32540939 ~ 32551381 (+) True AMCG00020770
AMCG00020766 mRNA upstream 213166 32520199 ~ 32528034 (+) True AMCG00020766
AMCG00020759 mRNA upstream 286367 32450177 ~ 32454833 (+) True AMCG00020759
AMCG00020782 mRNA downstream 22597 32767332 ~ 32770643 (+) True AMCG00020782
AMCG00020786 mRNA downstream 66558 32811293 ~ 32824902 (+) True AMCG00020786
AMCG00020789 mRNA downstream 172885 32917620 ~ 32923763 (+) True AMCG00020789
AMCG00020791 mRNA downstream 418680 33163415 ~ 33179686 (+) True AMCG00020791
AMCG00020793 mRNA downstream 911891 33656626 ~ 33660550 (+) True AMCG00020793
TU82011 other upstream 146746 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 462228 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 551819 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 646014 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 876494 31863383 ~ 31864706 (+) True G65343
TU82142 other downstream 201996 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 363138 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1210071 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1314376 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 1659799 34404534 ~ 34411620 (+) True AMCG00020820

Expression Profile