RNA id: AMCG00020796


Basic Information

Item Value
RNA id AMCG00020796
length 2679
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00020796
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33954806 ~ 33960582 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGTGCAGACtgtggcaggtttgttgtgaaCATGAAATGCGGAGTTTTGTCGCACATAACAACACAGCGGCGACGGCGACGGCCATAAGCGCGTTTGCACGGCAGAAAAGCGTCCAGAGCCGCCGGCAGAGCAGGCAGCGGCGGTGTGCGCGTCCTCACAGGCCGTGAGCAGTGTGCGGTGCTGTTGTGATGATGCCGGCCCGCAGCAGTGTGGCAGGTGTGCAGCCCAGCAGCAAGGTGAAGTACTCCAAGCTGGCAGACAGTGACGACGGCTACATCGACCTGCAGttTAAGAAGAGCCCTCCCAAAGTGCCGTACAAGGCCATCGCCCTGGCAACCGTCCTCTTCCTGATTGGCTCCTTGCTGATAGTCATCGGTGCTCTGCTGCTCACGGGATACATCGAAGTCACAgacccTAACCGCACTCTCCCTGTCCTGATCATCGGCATCCTGGTCTTCCTGCCAGGCTTCTACCACCTGCGCATCGCCTACTACGCCTCCAAGGGATACCGCGGATATTCCTACGATGACATCCCCGACTTCGACGACTGAGCTGGTCGCCAGCCCGGGAGCACCGAGAGGGGGGGAGCCCCGGAGTCGCCTCCTCGTCCGGGCGCTTTCCCACAGTGCGGCCGTGTTCTTGTCCCCTGTTGGATTCCTCTCGGGGAAATGAAGTATCTCAGCGTTCCACAGCTACTCCTCAAAGAACTTTATAAACTTGCCTTTTCAGTAGTATTGTATTTCTTCctgtttgaatatatttcagtgttttcgGGGTGGGTTTAGATAAGCCGCCCTTCTTTTTGTCCTAATCACCCGAAGCAGAGCTGCAGTGTTCCGCTCAAACCAAAATCTCAGAAACCGCGCCAGGCCATATTGAAACGAACGTCCGACTCGAACGCAGTGTGCGGGATGAGACCCAACACTAAGCACCAATCGGAGCAGACACTAACACTCAACTTCCAGTTCCCTCCGTCTCCAATCAATTCCCATGTTCCAGTGCAAATTCAATTACCCCTGCTCTGTCTGCTCTTATACAAGCGTGGTCTTCAGCAGGGTGGGGGGAGCTCTGGTTTCTCCTTCCAGCTGAGCTTAATTGGATTCTTAATTGGTAAAATCATTAACTTAATTAGTAGAAGTAGTTCCCCCCCCAAGATCCATTCTCGATCGATCGGTGTTTCCAGGGATGCAGACGCTGCCCGGACAGACGGTCTCTGTACTCGGTGTCCTCGGACGGTCTGCACCCCCGGGCTAATCTGAGACGTGCCTGTTGATACCAACGCTGTGTGAGAGACGTCTTCGGTTTGGGATGTAGAGGTGGGGGTGCAGTGCTACCAGTGCTTTGCTTTAATTGATCTGTAATGAAGCGTAGAGCacgggagggagggagtggagcgCAGGGTAAGAGTCGGGGTGGTGTGTCTCCGGCCGCACTCGCACTCCCCGTCTTGCACTGGTGCCTGGGAATGTTGCAACAGCTCCGTCTGAcgaaaaaaagacaacattaaaaataaagcgGTCTCCTCCCACTCCCTGACGTGTCCCGCCGTTATTGGCTCGGGTTTCCCACGAGGGGCCAGGCTGTTGCCAAGTGCTGCGCTGCCTGCCGCTCGAGCTGCAGACTGCGTGTGATTTAGAGACATAATGATGCAATAGGATACAATTCAGTGAAGAGCTGACGGGAGAAGAGAATATGTAAAACTAGACTTGTCCTTGAGTCTTTCTATTCTGAGCTGAGGAGGGGTGTGTGTCTTCTGATAATAAAGGTAATCATCATAATTAGCCCTTTCACTGGTGCTTTTATAACAACTGACTTGCAGAGACAGGGGGAAACGATCAACAGCTGGCACTGCTGTAGAGTCGCAGGACGACAGTCACTGGCTGGACTGGACTCGTGTGGTTCTGCAGGGGTCTGTCCTGCGGCACAGTCACTGACTGTAAAACTGGGCTCGGGTTGACATCACATCAAAGGACAGCGGTGGCCCACATGTGGCAAGCGTCTGCCCTAACTCTAGCTGGCAGAAGCGAGCATCTCACCTGGTCCTCCCCATCCCTCGCTTTCTCTTGGAGGATTTGGCCTCCTAGCCTGTAGAGGGGCACCTATTTCCACGCCAAAGTGCCGGGTTAAGTCTAGCCCAGCACACGAGCCCtgagagcacacacacaccccagcaGAGTCGGGACGTCCCACACCACCTGGCACGTGCTGTTCTCCGTTTGTCCTGCACGACTTGTTTCTCGGTAGCAGAGAGATTAAATGCCCCACCCACCCCCGCAGGGTTCGCAGGGTAAAGACTTCTTGGCATCCCAGACCTGACCTttgaagaaaactaaataaaaacacctcTGAGCGGCACGGGCCCTGGCCTGGCCTAAGGTTGGGGGTGGGAATGAAGTGGCTGGACGAGGTTGGTCCTCTCATCACTAACCCAATTAGGGAGATGGGGTCGAAAGGACTCTTCCTGTGGGGGATAACCTCTCTTACAGGTGTAGTTGAAAGTCAAAGGTGTTGCACCCTTCCCTCTATGTCTCTATGCCCTGTTCAACTCCAACCCTGTGTTTGGTATCTTCCTGGTCTGATGTGGAGCAGTGAAAACCGTGTCCAGTCACGCTGAACACAACAGCCTGAGACGCTGTTCCTGGTGCGCCGCGCAGCGCCCTCTGCTGGCCACGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82117 lncRNA upstream 1072702 32879099 ~ 32882118 (+) True G65670
TU82043 lncRNA upstream 1210085 32741200 ~ 32744735 (+) False AMCG00020783
TU82017 lncRNA upstream 1268500 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA upstream 1268500 32629723 ~ 32686320 (+) False G65594
TU81997 lncRNA upstream 1369106 32563430 ~ 32585714 (+) True G65579
TU82306 lncRNA downstream 89412 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 101570 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 261764 34222346 ~ 34261929 (+) True G65873
TU82362 lncRNA downstream 279307 34239889 ~ 34267100 (+) True G65877
TU82380 lncRNA downstream 456013 34416595 ~ 34480123 (+) True G65891
AMCG00020797 mRNA upstream 60283 33881738 ~ 33894537 (+) True AMCG00020797
AMCG00020795 mRNA upstream 110302 33841870 ~ 33844518 (+) True AMCG00020795
AMCG00020794 mRNA upstream 119367 33819061 ~ 33835453 (+) True AMCG00020794
AMCG00020793 mRNA upstream 294270 33656626 ~ 33660550 (+) True AMCG00020793
AMCG00020791 mRNA upstream 775134 33163415 ~ 33179686 (+) True AMCG00020791
AMCG00020801 mRNA downstream 7610 33968192 ~ 33990813 (+) True AMCG00020801
AMCG00020802 mRNA downstream 38895 33999477 ~ 34006803 (+) True AMCG00020802
AMCG00020799 mRNA downstream 54705 34015287 ~ 34019959 (+) True AMCG00020799
AMCG00020800 mRNA downstream 72608 34033190 ~ 34040263 (+) True AMCG00020800
AMCG00020806 mRNA downstream 190898 34151480 ~ 34155511 (+) True AMCG00020806
TU82157 other upstream 846394 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 965375 32946731 ~ 32989445 (+) True G65691
TU82011 other upstream 1360366 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 1675848 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 1765439 32186614 ~ 32189381 (+) True G65433
TU82307 other downstream 98529 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 443952 34404534 ~ 34411620 (+) True AMCG00020820
TU82530 other downstream 823630 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 1007262 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 1203231 35163813 ~ 35164985 (+) True G66149

Expression Profile