RNA id: AMCG00020800


Basic Information

Item Value
RNA id AMCG00020800
length 2114
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00020800
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34033190 ~ 34040263 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGCTTCCACACAGAGTTTGATGTTTGTGGTCCCAGGCCGTGAAATTATCGCTTTATTAACGCGCTAGAAACGAAAGTGCCCTCGACTGCACCGTACTTTTTTCggggaacattttttttttaccgctCCGTTGTTTGGGAAACAGTTGCAGCGGAGTGTAACTGTTGGCTAAATCAGAGGTGCTGAGGGGTGATGTCAGGCCCTGGCAGAGGGGACCCCCTTCCCCCGGGGGGGTCTCGGCCGGCGATGCCCCAGGGGCTGGTGGGCAGGAGATTGCCTGCAGCGATGACCTCAGCGCGCCTGCCGTCCATGCGCTCTCGGGACCTGACGCTGGGGGGGGTGAAGAAGaaAACCTTCACTCCCAACATCATCAGTCGCAAGGTCAAGGATGAGCAGAAAGAGGAGAGTGGCTATAAGAAGGAGAGGaaggacagagacagggacCGGCAGCGAGATGGGCGGGGCAGAGGCCGGGGTCGCCCAGAGGTCATCCAGTCCCACTCCATCTTTGAGCAGGGGCCGGCCgagatgatgatgaagaagagaGGTGGCTGGGAGAGCGAAAGGGACACCCCCAACACGGGCCCCTCCCCAATCATCAACATCAAGAAGGAGAAAAGAGAGACCGAGGAGGAGACCAAGGAGATACTGCGCATGCTGGAGAGAGACAACttcctggatgacccCCGGCTGCACAGTGACCTGCGCCGCTGTCCCGTCCAGCTGCCCATGTCGGTGTCGGGCTGGGTGTTCCGGGAGGAGGACGCCTCGCTGGGGAGCCTGAAGACCGAGGggaagcaggaggaggaggaggaggaggggatgGAGCTGGACATGAACCCTGCGGCCACCGTCAAAGTGAAGGAGGAGCCGGTGGAGGTCACTGAGGTCAAGAAGGCGGAGCTGGCCTTCAAGCCACCGCCCCTCCCAAAGGCGGAGTCTCTGGCAGAGCTGCTGAGTGGCCAGACCCTCTGCAAGGGGGAGGAGCTTCTGTTCCTGCAGCTCCCCGACACACTGCCGGGGCAACCCCCCACCCAGGAGCAGCGGCCAATCAAAACCGAGGTCCAGACGGAAGACGGCCAATCGGTGCTCATTAAGACTGAGCAGAGCCAGGAGTCCCTGCAGAGCGAGGACTGCTGCAGCCTGACTGATCTGGGCGAGGGGCAGGTGGGCCGCCTACTGGTCCGGAAGTCTGGCCGAGTACAGCTCATCCTGGGCCACATCAAGCTGGACGTCAGTATGGGGACGCCCTGCTCCTTCCTGCAGGAGCTGGTGTCAGTGGGCTCTGGCGATGGGCGCACGGGGGACCTGACAGTGCTGGGACACATCAAACACAAGCTGGTCTGCTCCCCAGACTTCCAGGCCCTGCTGGAGAACCGGGTTTGAGGGTGGGATCCCTCTGTTCCTTGTCCCAGGGGGAGGGGTGGAATGTGGCTCCACCCACTTCCTGCATAAGGGGCAGGGCTTTAGGAACGCCAGACTCCAGATGTCACTGATTGGCTGAAGGGACTCTGTGCACAGGGCAGTGAGAGGACTTCACAGGGACGGTTGTGCTTTGAGAACAGCAGGGTGAGACTACAGTCAACTACTGGGAACAGGGGGGCAGAGAATGATTTTAGTTTGAaaaatttgttaaaaatgaGCTTAATGTCACACCATGTAATCCATTGCTCCCAACAGGCCTCCACAATCCAGCCTGGGAGGTATAGTTTTATTTCGTTTGCTAGTTTACTTTTCCCCAACACATCCAAATATAACGTTCTGTGAAAAGGGCAGGATGTGACATCAGAAGGAAGCTCTGCAGTGAGACGGAGCGGGAGGCGTGTTGTCTCGAGCCCAGCCTGTTTGCATTCATTTCACACTTGTACGTCTACCTCGCGCACAGGGCTCGCACTGCTTTTGTCTGCCATAGCTTGACTGAATGACTCGCAGggtgggagggggagagaatCAGAAGTGACCCAGATGGTTCTGTTTGCATGGGATGAAAAGGGTTCCAGGTTCTGTATTCTGCTCTACAACTCTCAGGTTATGGGTTTGCACATTAGAGAACCACCACCAGACTGTAAAAGCAATGCAGTGTTATtgtaataaactaatttaaaaacaca

Function

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03026 RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82117 lncRNA upstream 1151072 32879099 ~ 32882118 (+) True G65670
TU82043 lncRNA upstream 1288455 32741200 ~ 32744735 (+) False AMCG00020783
TU82017 lncRNA upstream 1346870 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA upstream 1346870 32629723 ~ 32686320 (+) False G65594
TU81997 lncRNA upstream 1447476 32563430 ~ 32585714 (+) True G65579
TU82306 lncRNA downstream 9731 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 21889 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 182083 34222346 ~ 34261929 (+) True G65873
TU82362 lncRNA downstream 199626 34239889 ~ 34267100 (+) True G65877
TU82380 lncRNA downstream 376332 34416595 ~ 34480123 (+) True G65891
AMCG00020799 mRNA upstream 13231 34015287 ~ 34019959 (+) True AMCG00020799
AMCG00020802 mRNA upstream 26387 33999477 ~ 34006803 (+) True AMCG00020802
AMCG00020801 mRNA upstream 42377 33968192 ~ 33990813 (+) True AMCG00020801
AMCG00020796 mRNA upstream 72608 33954820 ~ 33960582 (+) True AMCG00020796
AMCG00020797 mRNA upstream 138653 33881738 ~ 33894537 (+) True AMCG00020797
AMCG00020806 mRNA downstream 111217 34151480 ~ 34155511 (+) True AMCG00020806
AMCG00020809 mRNA downstream 158235 34198498 ~ 34202915 (+) True AMCG00020809
AMCG00020808 mRNA downstream 193562 34233825 ~ 34238280 (+) True AMCG00020808
AMCG00020814 mRNA downstream 302428 34342691 ~ 34357137 (+) True AMCG00020814
AMCG00020817 mRNA downstream 353438 34393701 ~ 34402124 (+) True AMCG00020817
TU82274 other upstream 73508 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 924764 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1043745 32946731 ~ 32989445 (+) True G65691
TU82011 other upstream 1438736 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 1754218 32274286 ~ 32278972 (+) False AMCG00020748
TU82307 other downstream 18848 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 364271 34404534 ~ 34411620 (+) True AMCG00020820
TU82530 other downstream 743949 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 927581 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 1123550 35163813 ~ 35164985 (+) True G66149

Expression Profile