RNA id: AMCG00020801


Basic Information

Item Value
RNA id AMCG00020801
length 8456
RNA type mRNA
GC content 0.57
exon number 20
gene id AMCG00020801
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33968192 ~ 33990813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAGACAGCGACTCTGCATCCCGGGAATCATCGCGACCGCCACGCTCTGTCTGCTGCACCTCTCCCTGGGAGCCGACACGGTGGTGCGCGCTCGCGTCGGCAGCTCGGCACTGCTGGGCTGTAGCCTGTCCCTGCCCACCCCTGGCACCCCCTCACCCCGGCCCTTCCCCCTGCACGTGGTGGAGTGGGTGCGGCTGGGCTACGCGGTGCCCGTGCTTATCAAATTCGGGGTGTACAGCCCCCGGGTGCACCCCAACTACAGAGGGCGTGTGTCCCTGGAGCAAGGGGCATCCCTGCGTGTGGACGGGCTGCAGCTGGAGGACGAGGGCTGGTTCGAGTGCCGCATCCTGCTGCTGGACAGCCTGACGGATGAGTTCCAGAACGGCACCTGGACCTTCCTATCCATCACAGcCCCGCCTGTGTTTTTCAAGACCCCGCCCCCGGTCCAGGAAGCTCTGGAAGGGGATTCGCTGGCAATGACCTGCGGCGCCCACGGCAACCCTCCACCGGTCGTGGCCTGGAGAAAGGACGACACCCTGATTGAGAATGGAGACAAAGTGCAGgtgctCAATGGGACCCTGACTCTGTTCTCCCTGGGCAGAGGCAATGCAGGGGTGTACAGGTGTCACGTGTCCAACGTGGAAGGGAACCTCACGCACTCCACCCAGCTGCTGGTCAAAGGGCCCCCGGTCATTGTGGTCCCGCCAGAGGACAGCACCCTCAACATGTCTCAGGATGCAATGCTGTGCTGCCAGGCAGAAGCCTACCCCTCAAACCTGACTTATCTGTGGTGGAAGCAGGACAAGAACGTCTTCCACATCGAGTCTCTGAAGGGCCGTGTGAAGGTGCTGGTGGACGGCAGTCTGCTCATCTCTTCTGTCACCCCAGAGGATTCTGGGAATTACACCTGTGTGCCAACCAATGGGTTGCTGACTCCGCCCACTGCCTCTGCCTACCTCACCGTCAAGCACCCCGCCCAGGTGCTAGAGATGCCCGAGGAGACGTTCCTGCCCGCGGGGATGGAGGGCACCATCAGCTGCCCGGTCCGCGCTGAGCCGCCACTGCTCTTCGTCAACTGGACCAAGGACGGGCGGCAGCTCAACCTGGACAAGTACCCGGGCTGGATGGTGAACTCGGAGGGCTCAGTGTTCATTGCAGCGGCGAACGATGATGCAGTGGGCATGTACACCTGCACCGCCTACAACAGCTATGGCACCATGGGCCAGTCCGCCCCCACCCGCGTCATCCTGCAGGACCCCCCCTCATTCCGGGTGAGCCCCCGAGCAGAGTACCTGCAGGAGGTGGGGCGTGACCTGGTGGTACCCTGCCAGGCCAACGGAGATCCCCCTCCCAACATCACCTGGAGCAAGctgggTCTAGTCCCTCGCTCTCCGTACCAAGTGGCAGCGAACGGCTCCCTGCTCCTGCGCCCGCTGGCCAAGGACCACCAGGGGGGGTGGGAGTGTCGCGCTCGTAACCGTGTGGCCACAGTCAGCGTGCGCACCGCCGTGTCCGTGCTGGGCACCAGCCCCCATGCAGTGACCCTTGTAACCCTCGTTCCGGGGATCAACAATGTCAATGTCTCCTGGGAGCCGGGCTTTGATGGGGGATACTCCCAGAGATTCACTGTCTGGCTGAAGCAGGTGTCCAGAGGGAAGCACGAGTGGACATCGGTGGCAGTGCCGTCCCCACAGTGCTCCCTGCTGGTGGGGGGGCTGCTCCCTGGCACTGGGTACCAGTTCAGCGTCCTTCCCCAGAACAAACTGGGCTCCGGGCCTTTTAGCGAGATCGTCACGGCATTCACACTGGGTCAGTATCATACCAGTACCGTTCCCCAGAGCAAACCCCCACCGACAGTGAAGTCCATCCCCATTCTGGCTCCGCCCCGGTCCTTGTTGGCCAATCAGAGTGCAGGAGGCGTAATCTTGCAGTGGTTGCCACCCCTCTTGCAGTCTCCGCCCGTCACAGGCTACATCCTCCAATCACGGCGTGAGAAAGGGGAGTGGGTGGTGCTCGAGGGACTGATTGAAGCCAATCAGAGTGAGATACTGGTCCAGGGACTGCTGAAGGACTATAACTATGAGCTGAGGATGCTGTCTCGGGGGGAGAAGATAGTCAGTGAGCCCAGCGAGTCGGTCAACATCTCCACTGCAGGGATGGGCGCCTACCCCACTAGGACCCACCTCTCGGAGCTCCTCCCAGAGCCGCTGTTAGCCGGCGTGGTGGGCGGGGTCTGCTTCCTGTTCGTGGCCATCATCCTCTCGACCGTGACGGCCTGCGCCATGAGCCGCCGCAGAGAGAGGCGGCGCCGGAAGAGGAGGGAGGATCTCCCAATCGCCTTCCAGAAGGGGCCGTCTCCAAAAGCTAGCTCGCTTACTGACAGCCCCGACAGCATCGTAAAACTCAAGCTGTGCCCCCTGCTGTTCAGCCACCGctcctcctccccttcctcctcctcctcctcctctgaccGCTGCGCCTTCGAAAAGGCCAGCCGCAGTGAGTACCAGGACCAGCGCACCCAGCTGCTCTCCCACTCGGTGCCGCCCCCCCGCTACACGCTGTTCGAGAGCCACCTGGGGGGCCTGCCCTCGCCGACCGCCGCCATCGAGTCCATCTCCCGCGGCCCCGACGGGCGCTTCATGGTGGCGCCGTACGAGGAGGTCAAGAAGAGCCTGAAGAAAGACTTCCCCCAATGCTTAGGGGCATCCAAGCCCTGCACCCCTTCCTTGCGCAGGGGCTCCCCGAAATCGGACTACCTCTCGGAGAAGAAGGAGTCCCCCTCCCCGTTCTCCCTCACCGTGGACCTGCCTCTCCCCGCCGGCCCCCAAACCTCCCCGGGCCGGGTCCGCATGATGGCCAAGAACTTCTCCAAGAGCGCCTGCTTCTACAGCGACGAGGAAGGGGGCAGCTACCGGGaactggaggaggaggaggtgcgGGGCGGGAGTGTGGACCGcaaggaggagaagaggagtCGGGACTCCCTGAAGAAGTACCGCATGTCGGGGCAGACGAGGGAGGACGACCCCAACTGGACCGCTCTGAAGAAAGtgagggagcgggagagggagagggagagggagcgggagagggagcGGTACAGGCACTCCAGCTACCTTCCCctggagaaggagagacagCTGACGAATGCGAGTACGCTGGTGTCccagatggagagggagaggggggtggagaGCCTGAGCAAGTGCTTCCAGCtggcaagagagagggaggagatggagagagaactGGAGCGCTACACCACCGGCtggaagagagagggatggagggacgGGGACAGATCGGTGAGCCAGGGTAGCCTGCGTACGGGGAccggagggaaggagagagaggcggtggaggaggaggaggaggaggacgaggagccGGTGTGGAAGCTGCAAGAGGTCACTTTCAGGGCCAAAAGCAAGATGGCAACTGGGCAGGCACACAGGGCGAGCGGCTTCCGGAAGGGCTGCTATTTTGGGAACACCAGCAGCCCCTTGAGCCAGGTGTCTGTATCCTCCTCCTTCATTCCTTGGGACATCAGCCCCGTGACTTCCGTGACCAGCCTGGTCCCGGCCCAGAGCCCCCTGGAGAAGGTCACCGCCCCTGCCGTGTCCAGGGTCAAGGCCGGGGGCGAAGAATCGGAGGTCTCGGGGGCCCATGATCGTTCGGAGTCGCCTGTCACCCAgtgcacctctctctcttcctccctcctctccccgACTTCTGACCCCCTCCCTCAAGGTCCTCCCGGGGACGTCAGGGGAGCCAAGTCCCGGTACCccgagagaggagaggaaaggggagagagggagatgggtcACTCTCTGCCTGAAGAGGGCTGGAGAGGGGAGTCAGAGGAGGAGTCATCTGCTGTTACCTTCCTCTCCgagggagcaggagagagaaCGACTGAAACACTAGTGGACACGTACTCCTCCAGGGCCACCCTGCAGTCCAAAGCAGATAGGCTGGAACAGAGGTTAGGACAGGTCAGCTGTGTCTCCAGGACTGGgtcggagagggagagatgctCCAGTCCCCCGTCCCTCTGTCCTGACGCCAGCCAGAGCAGCAGCCTGGAAATGGAGAAGGAAGAGCGGGACGAGAAAGATGAGAGACTCTTGGCCAGTTCTGCCTTCCCAGGGTATGAGCGAGGGAGGGGCTGGGGGacggcaggagaggaggaggaggagagggagggtgagagCAGGCCGCAGCCCCCAGACAACAGTACCCTGCTGTCCTCAGACTTTGAGAAAGAGGGGATCAGGGTGCGCTCGAGAAAGAGCGATAAATACCTCTTCGCTGACAGCCCCAGCAGCATGTCCACTCTACCTCTAGTGGAGAACAATGACGTCCACAGTGACCAGTCAGCCTTCTCCATCAGCAAACTGTCCGATTCCTTGAAACCGAAGCAGAAGCCGCAGTGCTCCCCTAATTCCGTGGGTTCCTTGCAGAGGTCTAGGGCATCTCTTCTCCAGACCAGCGCCATCCTGGAATATCTGAGCCTCCCAGGTTTCATCGAAATGAGCGTGGACGAGCCGATGGAGGAGACAGAAGATGTGGACTCATCTGGGCCTATCTCCAGCCAGCAGTCTGTGAGTTGCCTGAGAGACGAGACAGAGTCAGTTACAAGGGACCGTGAAGCTTGTGTGCAGGAAAATGGGGAGGCCTGTTCAAGCCAAAAATGTGCGAGTGTTTTGGACGATAAGACGGCAGTTAGCCATAGTTTCTGTGGCGACTCAGTGCCCAGTGAGGCACAGAAGCTTGGACTTTTCATAGACAGGCTTGAATCTTCGAATTCCAGCTCGAAAGCAGGGCATTTGGAGAAAGGTTGGCCTACATTGGAGAGAAGCCTTCCGACTCCCAGTTTGGAGTGCGAAACCAAACCAGATGATAACAAAGATGACAGGCCTGTTTTTGGTCCAAATCCTGGGACTTTCCTAAAAGACAAGACCGATTTGGCCTTAGAGGCAGGGCAGGCCAGAAACAATCTTGGTGCTGGCTCCGCTGGGAAGGCGGCACATCACCAAAATGAACCCCACGCTACCGGATCCAACCCTTTGGATAGAAAAAGGGATCCTGCGTCTGAACGCCATCAAAAACACCGATTTATCCTGGAAGCTCAGGGCAGTAGGAGTAACCGATCCTATCAATCCCCTGTGCCCTTCATGAAGAAATCAGTCAGCAGCGGCCCAAGCAGGACTCTGTCCTCAGCCGACAGACCAGGGCCTTTCCTGAGGAAATCCCTCAGCTTGGGATCCCAGAAGTGGGAGACTTTCGAGAACCCCAGACCTCAGCTCTCTGAGAGGTGCTTCCAGGATGAACTGGCGTTCCCGGACGTCCGTATCAAGTCGCACAGCCTGGGCCGCAGCCCTTCATCCAGCTTCTACCCGAAACCAGGGCCTTTCCTGAAGGGGCCAGCCGGTTACAGACCCCCAGTGCGGACCGGTGTGCAGGTGGCGCCTGGAGATGCTCCTCCCAGGCAGGAACTGGAGGTGCACCAACGAAGACGGACAGTGGTGGCATTCCCGGAGACGCCCAAGTGGCCGTTCGAGTACCAGAACGGACCGGGAACCGCGCAGACTAAAGCGGTGCTCTCAGGGCCCCCCCACCTGGCACAAGCCCCCCTACCACAGCCCGGGGATGGGGGAGACTTGTTGCTGCCCCACCCTGACTCGATACGGGGCCCCGTCAGAGCCTTCCTGCCCAGGGGCTTCAGCTGGCCCTCTCCCTACCACGCCCCCTTCGAGCCCCGCCCTCCAGAGCtggagaaggggagggaggcGGAGGCGGAGATGATGAGGGACCACCGGGACGCCAAGGAGGCGCGGGGCAGCTATGCCAGCCAGAGCAGCGGCAGGGGCAGCGTGGGCCCCACCTACGCGCCCTCCCTCCTCCGctactccctctccctcacccccTCGCTGACCGGCTCCCCCGAGACCACGGAGGAGAGCGCACGGCTGGAGAGGTCAGCGCTCGACCTGCAGGAGAAGAGAGCGACCAAAAGGAGGAACACGTCTGTGGACGAGAGCTATGAGTGGGACACCGGGGACTTCGGTGTGGATTCCGAGATCCTGGAGACGCTGCGCGGATTCTGCTGAGGAGCGGCCAGCCAATTCCTGAAGCCTCCGCCCGCCCACTCGCACCCCCGCACCCACACAAATGGACGGCCGCCGGACGCTAGGGGTCTCACCATTGGACAGCCTGTACGTGGGTCGGGGGAAAAAAGATTGCGATTGGACTGCTGGCAGAACAATAAACCAATACACGGAGAGATAAACGCTGCAGGGACGGAACAGAGAGCAAAGCGACCGATTGTAAAAACAGAGGAGGCAACCCGACTGAAACTGTGCGCCCTGATCTGTGCCAGGGCTCCCTTCTCTCACAGTGTGGAGACTGACAGTGTGTGGCCCCTTCATTAAGACCCCATGGGCACCTTACAGCGCCGGGGGGAGCTGGACGGACACACCACATTCCTTGCCCCCGAATTGTTATGATCAATTGTCGATTGCCATAATCCACGGGACAGCTTTATCCAGGTACGAAGCCATAGCAGCGAGGACTGTTCGTTCGCTGAATCGTATGTGTTCTGGTTGTTTtgacgttgttgttgttgttgttgttttactccTGTTCGTGTGTGTGGCCCCGTGCGTGTTGTTCTTACTGTGGTGCTCTGGTGGTGGTGCGCTGAAGACAGTTTTTTCAATCACTAGCTTATTCTTGTTGTGGACTgtggattgtttttcttcatttttatttgcttgtttgttggtAAGGCCTGGATTTTACtcataaagacacacacacacacacagactaaacTAAAAAGAAACTTAAATACCAGCGCACCTCATATTTCGTATATGAGTCGGTGTGCTCTGAATAAATGGGAGaatcaatattttttctatttttaagcaTCTTGTCATTTATGGGTAAAGTCCAGATCCCTGATGTTTTAGGAGGGATGTTGTATCTATAATGATATAGCAAAGGAGTCCGAAACAGCTGGAAAAATCCTATAGAGCTTCCTGAACACTCACACATcaggtatatttttaattaagatgaGATATTTTTATTGACAAATCCTTACGAATATGAATTTTACTCAAATACAGCTTTACACTGATatataaagtgtattttttcagataGAAATTATATCTTGGAAGAAAGATGCAGGAATGTGTAACTTTGATAAAGACAAGAAAAAGGGCAGAAACTCTGAAAGCTTTTGATCACAGAGGCTTctatgggattttttttccaaagtgtTTACAGCTGACACAGAGCTGGGGAGCCACCCAGCCTGTAGGGATGTGTTGTTTATGTTCAAGACGTTTGTAAGCTGACTGCAACGCTGCTGGCCAGTTTCCATGCCAACTCCAGAGACCCAGCAGCTTGTGCTCCTGTGCAAGGGTTTACTAGAGCCGTCAATCGGTGctatcagtcaatcagtcaagCGATCGATCGATCCGCTATCGAGGCAGGTCAAAATATATCAAGGCGCTTGGATGCAGGCGGGAAAAACCTCTGGATCAGCTTCCTAGagcaaaaatgtataacatttatCCTTGCATTTATGTTATAATTGATGTGATATATTTATGGGCACTGTGCATCATAAATATATCACATCAATTATAACATAAATGCAAGGAAATATGTTTGATAAAGATGTATCTGCCCTGCTTTTGCTGACTCTGGCGTTGATGTTGCTGCCTCTTGCTCTGCAGTCTGCCTGCATTCACTGAAGAAGTATAAAAGGggagaaacatgttttattttgttttttagtttgtttctgttaatgttctgttttttcactCCGCTGTCAGTATCCCTGGCTGAACCACTTGCAGGAATGTGTTTTCTAGCAAGCGCTGCAGTAAGGGATCAGGGGGGATTAGGAGTGGTGATGGGGGGGCTCTCACTGTGTGAAGACCCCTACTGTCACAGCAAAGGGTGCTGTGGGCTCACACAGTTGCAAGCAGCCTTCGTTTTCAGTGCCCGCAAATCTACATCAGAATGCTGCGTTTCCAACATTCTTCTTTGAGAAACATGGGGCGCTTAAAGGTGGATATCGCCCCCAAACTGTGTGCATTTTCTGAATTATGCAGGGTAACTACCACAATCTCAAACTCAGCATCTTCTGCCCTTCTGTTCCTGGGCCTGGAGCCCTTTCTCTCTCCAATCCTTCCCTGAATCATGTCACTTATTGGACATACACCACATTGTTTTAAGGTCCTTTTCACCCCttcgaaaaaaaaaaggcttaaaaGATTATTTGGAGTCAAAGACACACTGCCTGTTACATAATTGGCAGCTTGTGGTGAAGGATTCAACTGGCCCAGTCAATCCACTTAATCAGTCCCACTGCATAACTGGCGGGCTGGAACTAAAactgtacaaaatataaattcaaagc

Function

GO: NA

KEGG:

id description
K22655 IGSF9; immunoglobulin superfamily member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82117 lncRNA upstream 1086074 32879099 ~ 32882118 (+) True G65670
TU82043 lncRNA upstream 1223457 32741200 ~ 32744735 (+) False AMCG00020783
TU82017 lncRNA upstream 1281872 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA upstream 1281872 32629723 ~ 32686320 (+) False G65594
TU81997 lncRNA upstream 1382478 32563430 ~ 32585714 (+) True G65579
TU82306 lncRNA downstream 59181 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 71339 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 231533 34222346 ~ 34261929 (+) True G65873
TU82362 lncRNA downstream 249076 34239889 ~ 34267100 (+) True G65877
TU82380 lncRNA downstream 425782 34416595 ~ 34480123 (+) True G65891
AMCG00020796 mRNA upstream 7610 33954820 ~ 33960582 (+) True AMCG00020796
AMCG00020797 mRNA upstream 73655 33881738 ~ 33894537 (+) True AMCG00020797
AMCG00020795 mRNA upstream 123674 33841870 ~ 33844518 (+) True AMCG00020795
AMCG00020794 mRNA upstream 132739 33819061 ~ 33835453 (+) True AMCG00020794
AMCG00020793 mRNA upstream 307642 33656626 ~ 33660550 (+) True AMCG00020793
AMCG00020802 mRNA downstream 8664 33999477 ~ 34006803 (+) True AMCG00020802
AMCG00020799 mRNA downstream 24474 34015287 ~ 34019959 (+) True AMCG00020799
AMCG00020800 mRNA downstream 42377 34033190 ~ 34040263 (+) True AMCG00020800
AMCG00020806 mRNA downstream 160667 34151480 ~ 34155511 (+) True AMCG00020806
AMCG00020809 mRNA downstream 207685 34198498 ~ 34202915 (+) True AMCG00020809
TU82274 other upstream 8510 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 859766 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 978747 32946731 ~ 32989445 (+) True G65691
TU82011 other upstream 1373738 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 1689220 32274286 ~ 32278972 (+) False AMCG00020748
TU82307 other downstream 68298 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 413721 34404534 ~ 34411620 (+) True AMCG00020820
TU82530 other downstream 793399 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 977031 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 1173000 35163813 ~ 35164985 (+) True G66149

Expression Profile