RNA id: AMCG00020802


Basic Information

Item Value
RNA id AMCG00020802
length 1868
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00020802
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33999477 ~ 34006803 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACGCCCTGTCCGAAGCCAGTGACCTGAGCGGCGATGACGGGCAAGAGGCCTGGCTAAATGAGAAGTTTTCCCCGGAGCTGCTGGAGACGCGGTCCGAGATCGTGGAGTGTGTCCTGGAGCAGCTGTCCCACATGGAGCAGAACCTGCAGCGCGTGCAGAAGGGCGACCTGAAGGCCAGCGTACACCGCATGGAGATCGACCGCATCCGTTACGTGCTCAGCAGCTTCCTGCGCTCGCGGCTGCACAAGATTGAGAAGTATTTCCCCCACGTCCTGAAAAAGGAGAAGGCCCGGGCCGAGGGAGACCCATCCTACTTGTCCCCGGAAGAGTTCGCCTTCGCTAAAGAGTACCTGGCCAACACGGAGACCTACCTGAAGAGCGTGGCTCTCAGACACATGCCTCCCAACCTCCAGGCTGTGGACCTGGCCAAGTCGGTGCCTGAGCCCAGCCTGGACTCGGAGTATGCTGTTGACATGGAGGAGGGCTCACAGCACTTGATGCGCTACCGCACTATAGCGCCCCTGGTGGCCAGTGGGGCAGTGCAGCTCATTTAGGAGCGTAGATGCAGAATGGACGGTGACCAGCTCGGAGgAGCAGAACCCAATTTCTGTGCTGCCTGGCCCTGTCCTGTTCCGCCCTCAGTGGAGCCCCGGCCCGGTACACAACACATCACCCTGCTCTGtgtcagaaagaaaagaaaaccgaACAGACTTTTCCAGACCCAGATTGTAAGGGAACTTCCTCTCCCCTCTGCCATCAAGACTGTCTGTCCTGCCAACTCTCTCGGGTTCAACAACAACGAAAGCTTGCTGTGGACAGGGGCGTCCATGAAGATGAATATTTAGGGGTTTCTTCGGTTTTAGTTTGCTTTTGAAGATGCAACTTCATCAAAATCACCTGCAGATTCAATCAAATGTTGCTAAATGAAGACTGAGCCCTGAGGAAGGTAACAGGGCAGAGGAGGGCATCGTATATATAGgccatatgtatatatatataatcatagattttgtattaaaataatcccTGCCTGGGTGTCAGAGAGGTGTGCAGTGATTGTGTCGGTCTGTGGAACTGATAAACCATCAAGGAGCAGAGCAAGGAAAACGGGGTTGACACCCCCACATAGACCCTATGAGATAATCTGCTGAGACAGATTGACAGCACTTCTGATCTCAGTGACCAGAAAACTTCTACTTCTGCCTCAGTGTTTCAGGCCTTTGTTGGGGGGTGGCAGCTGGCCAGGGCCTTCGTAGCTGTGGACTGGGGGCCGAAGCCCTGGGGCCCTGCTTGTGTGTGCCAGCTCCTGTAACTGATCAATTGTCCGCACTTGTTGATGGCAGTTTGGTAACTGGTTGTGGCAGTTTGGCTTGGGGCTGCATCCCAAATTTCCCCCTGCTTCCCCCTAAGCACTTTTATACAGCAATTAAAAACTGCACTGCCCgtttcccctctctttctttctcaaatTGTATTAGCAGGACGCTCTGGTGTTGACAAAGCtttcaaaatatcacaaataatattgcagaacaaatatattacttattttgtataaCTAATTTATCAGTAACTGCTCAAGGCAGGCAGGGTGTCTATccactgtccctcaggctgtggcaggtcTTATTGTGGTCAGACAGGAGGTTACATTCtggtgtttctctctctttctctctcttccatgtCCAGCGGTGATGTTCTTTTGAAAGGTACAGATGTACAGACCTGGGATTTTTCCACCTggatagaaaattaaatatgaatgtgaatgATTAATCCATGAGAAAGATCCTGTTGcatcttcagttttatttgtgtgcctCTGGTCATCAGTACAGTGGGGAGGTTTTGTCCTGct

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10735 GINS4, SLD5; GINS complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82117 lncRNA upstream 1117359 32879099 ~ 32882118 (+) True G65670
TU82043 lncRNA upstream 1254742 32741200 ~ 32744735 (+) False AMCG00020783
TU82017 lncRNA upstream 1313157 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA upstream 1313157 32629723 ~ 32686320 (+) False G65594
TU81997 lncRNA upstream 1413763 32563430 ~ 32585714 (+) True G65579
TU82306 lncRNA downstream 43191 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 55349 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 215543 34222346 ~ 34261929 (+) True G65873
TU82362 lncRNA downstream 233086 34239889 ~ 34267100 (+) True G65877
TU82380 lncRNA downstream 409792 34416595 ~ 34480123 (+) True G65891
AMCG00020801 mRNA upstream 8664 33968192 ~ 33990813 (+) True AMCG00020801
AMCG00020796 mRNA upstream 38895 33954820 ~ 33960582 (+) True AMCG00020796
AMCG00020797 mRNA upstream 104940 33881738 ~ 33894537 (+) True AMCG00020797
AMCG00020795 mRNA upstream 154959 33841870 ~ 33844518 (+) True AMCG00020795
AMCG00020794 mRNA upstream 164024 33819061 ~ 33835453 (+) True AMCG00020794
AMCG00020799 mRNA downstream 8484 34015287 ~ 34019959 (+) True AMCG00020799
AMCG00020800 mRNA downstream 26387 34033190 ~ 34040263 (+) True AMCG00020800
AMCG00020806 mRNA downstream 144677 34151480 ~ 34155511 (+) True AMCG00020806
AMCG00020809 mRNA downstream 191695 34198498 ~ 34202915 (+) True AMCG00020809
AMCG00020808 mRNA downstream 227022 34233825 ~ 34238280 (+) True AMCG00020808
TU82274 other upstream 39795 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 891051 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1010032 32946731 ~ 32989445 (+) True G65691
TU82011 other upstream 1405023 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 1720505 32274286 ~ 32278972 (+) False AMCG00020748
TU82307 other downstream 52308 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 397731 34404534 ~ 34411620 (+) True AMCG00020820
TU82530 other downstream 777409 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 961041 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 1157010 35163813 ~ 35164985 (+) True G66149

Expression Profile