RNA id: AMCG00020808


Basic Information

Item Value
RNA id AMCG00020808
length 1032
RNA type mRNA
GC content 0.62
exon number 8
gene id AMCG00020808
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34233825 ~ 34238280 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCACATTCCGCGTACTGAGATCTGTCTACCGGTCCACCAACCAGCAAGTGTGCCGACTGCATCTGTCAGCGACGAGGCAGGAAGCGGTGGTCATCTCGGGCAGGAAGTTGGCACGTCAGATCCGCGAGGAGGCTCGGGGCGACGTGGAGCAGTGGGTCTCCGCCGGCAACCGCCGCCCGCATCTCAGCGTGGTTCTGGTGGGCGACAACCCGGCCAGCCACTCCTACGTCCTGAACAAGACCCGCGCCGCCGCAGATGTTGggATCAGCAGCGAGACCATTCTGAAGCCCAACACTATCTCGGAGGAGGAGCTTCTAGAGCTGATCCACAAACTCAACAGCGACTGCAACGTTGACGGACTGCTGGTGCAGCTGCCTCTGCCTGAGCACATTGACGAGAGGAAGGTGTGCAACGCTGTGGTCCCAGGGAAGGACGTAGATGGGTTTCACGTGGTGAATGTGGGGAAGATGTGTCTGGACCAGAGCACCATGCTGCCTGCCACGCCTTCAGGGGTCTGGGAGATCATCAAACGCACAGGCATCCCGACCCTGGGGAAGAACGTGGTGGTGGCGGGCCGCTCGAAGAACGTGGGGATGCCCATCGCCATGCTGCTGCACACTGACGGCCGGCACGAGAGGNNNNNNNNNNCCCCCCCCCCATTTGGTTGCGACGCCACAGTGACCATCTCCCACCGCTACACGCCCAAGGAGCAGCTCCGGCAGCACACCAGGATCGCCGACATCGTGGTGGCGGCAGCCGGGATTCCCAACCTCATCACCGCGGACATGATCAAGGAAGGAGCCGCTGTGATCGATGTCGGGATCAACCGGGTCCAGGATCCGGTCACCGGGAAAGCTAAGCTGGTCGGGGACGTGGATTTTGAAGGTGTGCGTCAGAAGGCGAGTTACATCACGCCGGTGCCGGGCGGTGTGGGGCCCATGACGGTGGCCATGCTGATGAAGAACACCATCATCGCCGCCAAGAAGATGATCGTCCAACCGGAGCGTCTGCGCATGGCCGCCTCCTAA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0009396 folic acid-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004477 methenyltetrahydrofolate cyclohydrolase activity molecular_function
GO:0004487 methylenetetrahydrofolate dehydrogenase (NAD+) activity molecular_function
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity molecular_function
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
K13403 MTHFD2; methylenetetrahydrofolate dehydrogenase(NAD+) / 5,10-methenyltetrahydrofolate cyclohydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82308 lncRNA upstream 171230 34062152 ~ 34062595 (+) True G65831
TU82306 lncRNA upstream 182788 34049994 ~ 34051037 (+) True G65829
TU82117 lncRNA upstream 1351707 32879099 ~ 32882118 (+) True G65670
TU82043 lncRNA upstream 1489090 32741200 ~ 32744735 (+) False AMCG00020783
TU82018 lncRNA upstream 1547505 32629723 ~ 32686320 (+) False G65594
TU82362 lncRNA downstream 1609 34239889 ~ 34267100 (+) True G65877
TU82380 lncRNA downstream 178315 34416595 ~ 34480123 (+) True G65891
TU82462 lncRNA downstream 274377 34512657 ~ 34512879 (+) True G65954
TU82464 lncRNA downstream 275766 34514046 ~ 34515896 (+) True G65956
TU82472 lncRNA downstream 288587 34526867 ~ 34527075 (+) True G65962
AMCG00020809 mRNA upstream 30910 34198498 ~ 34202915 (+) True AMCG00020809
AMCG00020806 mRNA upstream 78314 34151480 ~ 34155511 (+) True AMCG00020806
AMCG00020800 mRNA upstream 193562 34033190 ~ 34040263 (+) True AMCG00020800
AMCG00020799 mRNA upstream 213866 34015287 ~ 34019959 (+) True AMCG00020799
AMCG00020802 mRNA upstream 227022 33999477 ~ 34006803 (+) True AMCG00020802
AMCG00020814 mRNA downstream 104411 34342691 ~ 34357137 (+) True AMCG00020814
AMCG00020817 mRNA downstream 155421 34393701 ~ 34402124 (+) True AMCG00020817
AMCG00020820 mRNA downstream 168306 34406586 ~ 34408796 (+) False AMCG00020820
AMCG00020816 mRNA downstream 175334 34413614 ~ 34418667 (+) True AMCG00020816
AMCG00020818 mRNA downstream 182554 34420834 ~ 34426849 (+) True AMCG00020818
TU82307 other upstream 174360 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 274143 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1125399 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1244380 32946731 ~ 32989445 (+) True G65691
TU82011 other upstream 1639371 32592482 ~ 32594454 (+) True G65590
TU82376 other downstream 166254 34404534 ~ 34411620 (+) True AMCG00020820
TU82530 other downstream 545932 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 729564 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 925533 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1508945 35747225 ~ 35750354 (+) True AMCG00020874

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000059_10285427_10291570.mRNA True 1210 mRNA 0.49 7 CI01000059 10285154 ~ 10291570 (-)