RNA id: TU82397


Basic Information

Item Value
RNA id TU82397
length 1532
RNA type TUCP
GC content 0.41
exon number 2
gene id AMCG00020810
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34222315 ~ 34239697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGTTACATATttcaaggtttattttttggatATTTCAAGTACAAAAATCTCATATGCAAAttctttacaaagaaaaaaaatcagaaaacagGAATAATGCATAGCTTTATCGtctccctttgtttttgtttccacctTTTTCGTACTTGATAAAATAACCACCAAAAACaaccactgaaaataaatttaaaaatccaaaATCTTTGGAATATTTGATATGCAACTGTTGCACCAGTCAGTTTGCATAGCCCTTGAAGAGGTCGTCCTCACCAAGGGATCCGGCCCAAGCCAGAGCATTGGAGTCCACCAGTCAACTTCTAAAATCAAAGATGCACTAAGAACGGTCAAAGTGAGGTATAAAACACGGCCGACTGCCTTGCTTCCCTCCGGTCTCTGTGCCGTCGGTGATTTCTGCAGCTCAGTTCTCCTGCTCAGTCTGGTGATTTCTGATCAGAACAGCCCCTCTCTCCCTGGGCCCGAGGAATGCGCCTCCCGCATCCGAGCATGGAGGGGAGACCTGCCTACTGGCTGCCCCAGATCCAATTTTGTTCTTGATCATTTTCCTATGCTTGCCGCCCCCCCACTCCAGGATCCTAGAGACAAGGACCCAATTTCataccacaaaataaaaccaatcttCTAACAACCCTTATGAAGCGTCCCACATCTCACTTAAACCCAGTTATGGACTAATCCGACTGCCAGCCTGGCTGAACTGTGATTGGCTGGGCCATCATAACAAGTCTTAAGAACAAATAACTGAACCAGCAGATCATTCAACGCGTAAACCTCTTCTCAGTGGGTCAATCAGGCGATGATTTTGAAAACCCTGACTGCGTTGAACCCAGATTTCCGCCCAGTCTCTCCTGGAGCACCAAGACAAATGCCTGGCGGTCCTGACGAGCTGGACCGGTCTGCTGAAACACACGACCAGAGAACCGCATGTGCAACGTGTGCAGCCCGGCAGCCCCGTAGCACCATGAACCCAAGGGACGCTGCGCCCGTTCATTGCCCTCCCCCGCTGTGTTTCATGCTTTAATAATTTTTATACCTCCGTAATATGCATGTGGAAGGTTTCCGGCAAAATCATGACcgtctcctgttttttttttttttttttttttttttattcaggaaAATATGTGAACTTCTTTTGGACCAATTAATgtaaaagcagattttttttcaatgcCTAAGCTtataatgtataacattttcttgttttattttgaaagttcatgcatcttttttttgtttttgagggtAAATACTTTTTGTGTGGAATATGTAGATCCTTGTGgtccttccttttttttattcactgtagattcttctgttttaaattctattttattttctatacatttttccatAAATGAGATCTGTgccttagaaaacaaacaaatgataaatCCTTTTTGactgaaatacagtatttttgtgCACAATAGCTTgctgtaaatttaaataaactttgagggagttttagaaacaaaacattctttgcatgtttttgtgttttggattCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82355 lncRNA downstream 2305 34218759 ~ 34220010 (-) True G65872
TU82349 lncRNA downstream 6756 34215057 ~ 34215559 (-) True G65867
TU82340 lncRNA downstream 105372 34116606 ~ 34116943 (-) True G65858
TU82325 lncRNA downstream 169207 34052460 ~ 34053108 (-) True G65845
TU82324 lncRNA downstream 171246 34049996 ~ 34051069 (-) True G65844
TU82420 lncRNA upstream 176960 34416657 ~ 34420190 (-) True G65915
TU82465 lncRNA upstream 274671 34514368 ~ 34515898 (-) True G65957
TU82523 lncRNA upstream 507244 34746941 ~ 34747361 (-) True G66001
TU82525 lncRNA upstream 509430 34749127 ~ 34749329 (-) True G66003
TU82526 lncRNA upstream 509747 34749444 ~ 34750150 (-) True G66004
AMCG00020813 mRNA downstream 1635 34216896 ~ 34220680 (-) True AMCG00020813
AMCG00020811 mRNA downstream 11229 34208909 ~ 34211086 (-) True AMCG00020811
AMCG00020807 mRNA downstream 108626 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020803 mRNA downstream 146711 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020805 mRNA downstream 194753 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020812 mRNA upstream 192 34239889 ~ 34272166 (-) True AMCG00020812
AMCG00020815 mRNA upstream 50290 34289987 ~ 34314712 (-) True AMCG00020815
AMCG00020821 mRNA upstream 193728 34433425 ~ 34441728 (-) True AMCG00020821
AMCG00020822 mRNA upstream 203589 34443286 ~ 34456490 (-) True AMCG00020822
AMCG00020830 mRNA upstream 279503 34519200 ~ 34522321 (-) True AMCG00020830
TU82216 other downstream 853210 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1330822 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1565296 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1611620 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1857173 32361235 ~ 32365142 (-) True G65549
TU82568 other upstream 569077 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 622922 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 909871 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 923117 35162814 ~ 35170179 (-) True AMCG00020853
TU82875 other upstream 1439735 35679432 ~ 35684555 (-) True G66279

Expression Profile