RNA id: AMCG00020826


Basic Information

Item Value
RNA id AMCG00020826
length 1377
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00020826
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34498286 ~ 34502202 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACACTGCCAGGTTAAGAATCATCATCGTGGCCCTGTGGTTCCTTATCCACGCCGGGGGTTGCAGCCCAATCATGGCGCCTGAGAACCCCCGTCCTGAGATGGGAATGGATGGACGCAACCTCTTCAGCGACCCTCTGCTGGAGCAGGACAGCGAGCTGGATTTCCAGACCTTCATGCAGACCCTACGGAGCCAGTTCCTGAAGACCTTCAACCTGTCAGGCTTCCCTCAGCAGGGCGCCACCAAAGTGGAGCCGCCAGAGTACATGCTGGAGCTCTACAACAGGTTCGCCAACGATCGCTCCTCCATGCCCTCCGCCAACATTGTCCGCAGCTTCAAGAATGAAGACACATCCCCGTACAGCAAGGACAGCAGCGGCATTCGCAAGCACCCTCTGCTCTTCAACCTGTCCATCCCCCACCACGAGAGGATCACCAACGCCGAGCTGCGGCTGTACACCCTGGTGCAGCGCGACCGCCGCCTGTACGACGGAGTGGACAGGAAGGTGACCATCTATGAGGTGCGCGAGGGTGGGGAGGAACAGCAGGAGGCTCCGGAgcaggggaggagaggaggaggaggaggaggaggagggaaggaGGTGGTGCTAGCAGAGCTGGCGTCCCGGGAGGTGTACGGGACAGACAGCGGCTGGGAGGCCTTTGACCTGACCGAGGCCACCCGCCGCTGGCGCAAGTTGGACTACACCACGCACCGTCTGGAAGTGCACATCGAGAGCGTCGATGGCGGTGGTGGTGAGGGGGGCACAGAGGCCTACGAGGAGGGTAACCTGGACATCGATGTCAACCCCGAGGCCAAGCACGAACCCTTGCTCATTGTCTTCTCAGACGACCAGAGCAGTGACCacaaggaggagaggaaggagcTGAACGAGATGATCGGGCACGAGCAGATGCCGGAGCTGGAGAACCTGGAGACAAGCCTCAATGGGCTGGAGGGCCAGGACAGCGACGGCCCCAATGAGGAGTCCCTGATGCAGATGAGGTCCAATTTAATCTACGACACAGCATCCCGCATCCGGAGGAATGCCAAAGGCAACCACTGCAAGAAGACCTCCTTCTACGTGGAGTTCAAGGACATCGGCTGGGACAAGTGGATCCTCGCCCCTCCGGGCTACGAGGCCTACGAATGCAACGGTGTCTGCAGCTACCCCATGACCGAGCACGTCACACCCACTAAGCACGCAATCATTCAGACTTTGGTTCACACGACGAGTCCGCAGAAGGTGTCTAGAGCCTGCTGTGTGCCCACGAAACTAGACCCCATATCCCTGCTTTACCTGGATGACACAGGTGTTGTCACATACAAGTACAAATACGAGGGGATGGTGGTGGCGGAGTGCGGCTGCAGATAG

Function

GO:

id name namespace
GO:0060840 artery development biological_process

KEGG:

id description
K22670 BMP10; bone morphogenetic protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82380 lncRNA upstream 18163 34416595 ~ 34480123 (+) True G65891
TU82362 lncRNA upstream 231186 34239889 ~ 34267100 (+) True G65877
TU82357 lncRNA upstream 236357 34222346 ~ 34261929 (+) True G65873
TU82308 lncRNA upstream 435691 34062152 ~ 34062595 (+) True G65831
TU82306 lncRNA upstream 447249 34049994 ~ 34051037 (+) True G65829
TU82462 lncRNA downstream 10455 34512657 ~ 34512879 (+) True G65954
TU82464 lncRNA downstream 11844 34514046 ~ 34515896 (+) True G65956
TU82472 lncRNA downstream 24665 34526867 ~ 34527075 (+) True G65962
TU82489 lncRNA downstream 174709 34676911 ~ 34732379 (+) True G65978
TU82515 lncRNA downstream 244691 34746893 ~ 34748114 (+) True G65994
AMCG00020827 mRNA upstream 4896 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020819 mRNA upstream 22641 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020824 mRNA upstream 41385 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020825 mRNA upstream 46559 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020823 mRNA upstream 48089 34445279 ~ 34450197 (+) True AMCG00020823
AMCG00020835 mRNA downstream 348460 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020840 mRNA downstream 376488 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020842 mRNA downstream 379289 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020844 mRNA downstream 417616 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020843 mRNA downstream 432813 34935015 ~ 34936792 (+) True AMCG00020843
TU82376 other upstream 86666 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 438821 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 538604 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1389860 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1508841 32946731 ~ 32989445 (+) True G65691
TU82530 other downstream 282010 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 465642 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 661611 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1245023 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1365191 35867393 ~ 35908402 (+) True G66362

Expression Profile