RNA id: AMCG00020842


Basic Information

Item Value
RNA id AMCG00020842
length 5028
RNA type mRNA
GC content 0.60
exon number 24
gene id AMCG00020842
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34881491 ~ 34892993 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cggagagagagaaggggagaaagagagCGGCCAGCACGGTGGTCAGTGACACAGCGGGACCCAGGGCAGAGGGCAGCGATGCTCCCAGCAGGAGGAGCCCGGGGTTGTGCGGGGAGCGGAGCGGCAGTGAGGCGGCACTGAGGCGGCAGTGAGGCCGGGTCTGGTCCGGGGGCTGTGTCAATGCAGACCCGCGCTCCCTGTTGGAATCAGCAAATTGGTGCGCACCTCACCAGGGAGATGGACGTGCCCATGGCCAATCAGAGCTACAGGAGCTGTCAGCCCTGGCAGCATCCACAGGGCTACAGCGCCCGACCTCCTCCCATCCACCTGAATAACTCGCCTATTGTAGTCCACAGTGCTGCAGTTGCACCAACCTACTGTCCAATCAGAGGGGTGCCAACAGTCCCTGCACCTCTGAGTTTGGACCCCTCCCAGCACCTGTCTGCCCCACCTCCCCCGTCCTCTGGATCAGGGTTCGAGTGGCAGCAGCACTGGGGGGCCCCACCTCTCGCCCCACCCCCTCCATGCCCCAGCCTGTCAACATTACCCCCTATAGCCAACGGTGTAGTTGAGCCTTGGGAGTCGAGCCCTGACCAGTCTGGCCATAATGACACACGGCTGCCACTGGGGGGCGGCAGCACTAAGCAGgactgCAGTGTTCAGAGCCCTGGCTCTCGTTACGGCCTGGACCCCCAGCTCATCCCCAGTGCGGTGACGGTCATTGAGGAGGACAGGGCCCAGTGGGAGGGGCGGGTGTTTGTGTCAGACTCCAGTGGACAGCTGCCCCCCCTGTCCAGTACTGAGTGCACGGTGGAGGATGTAGGCAGTGCCAGTCCCCGGTTTATCCGCTGCACCTCGTACTCTTTTCCCAGTGAAGGGGGGGCGGCCCAGCGCTGCCACCTGCCCCTGGGGGCCATCATCACCCCGCTCGCCCAGCCTGGGGCAGGAGAGCGCCCCCTGGTGCAGGTGTCCCGCAGTGAGGAGGGCgcctgtgtgctgtgctgcgGGGGGTGCGCCGCTCAAATGTGCCCCTCTTTCACCTGGCAGGACTGTGGACAGAGGTTCCACTGCCCTTTCTGCGGGCACGTCACTGAGGTGCCCTGGCAGTGCTACCAGCCCACGGCGCGGGGGAGAACGCGGCGCcgGGAGTGTCCTGCTCTCCTATTGGCAGTGGATGTGTCCAGTCAGGCCGTGAGAGGAGGTCAGCTGACCCACATCTGTCAACAGCTCCGCTCTTTCCTCGACTCCCTGCAGAGGGACAGCGGCTCGGACCAGTCGCAACTGAGAGTGGGAGTAGTCACCTACCACAGCAGTCTTCACCTCTACAACCTTAACCCCGCCCTGTCTCGCCCCCACATGCTGGTTATCACGCAGACTGAGGAACTGGAGCTGCCGGTGTGGGAGGGTCTACTGGTCCCACTGAGAGACTGTAGGACAGCCATTGACAAGGTGCTGCAGCAGATCCCCAGTCTGTTCTCGGAGGCAGAGGACTCTCCGGCATCCCAGGAGCTGCCCGTGCACTACGGCCTCCACATCCTGAAGGTGGCTGGCTGTCCAGGGAAGGTGCTGTTTTTCCACACAGCGCCCCCCAGTGACGGGAGCCTGAACTGCAGCAGCGGCTCCTCTGGCTTCTTCAGCTCCAGCAAAGAGAAGTCACTGTTCCAGCCCCCGGAGCACTGCGTCGCGTTGGCTCAGGAGTGTGTCGCTCAGGGCTGCAGCTTCCATCTCTTCCTGTTCTCCCAACAGGCAGTGGGAGGGGCCTGGCCAGGACACACCCCTTATTTGACTGGGGGTGGGGTGTATAGCTATGGCTGCTTGCAGGGACAGGTGGACTCAGAGCAGTTCCACAGTGACCTAAGGAGGTGTgtggacacagagacaggctACAGGGTGGAGATGCAAGTCTCTGTAAGCAAAGGTCTGCGAGTGTCTGGGTGTTTTGGGGCGTTCACCCCCGGCCCTGACCCTGCCCACATCCGCCTAGCCACCATCGATTGGCACACGGCCCTCGCAGTGCAGTTCACACACCACAGCCCATTGGACGAGGAGAGGGGCGTGGTCATACAGGTGGCCCTGTCCTACACGTCGTCTCTGGGGGAGAGGAGGACCCGTGTGCACAGCCTGAGCTTGCGCTGCTCTCGCCACCTGGTGGACACCTTCCGCAACTGCCAGGCCGAAACACTGCTCACCTTCTACTGCAAGAGAGTGTACTGTGCAGTGCTGACCCGGCCCCTGCAGGACCTGAGGGACGAGCTGCTGACAGAGCTGACGGCCATGCTGACCTGCTACCGACAGCACTGCTCCACCACGGCCTTGACACATGGAcagCTGGTCCTGCCCCAGGGCCTGAAGTCTCTGCCGGTAATGCTGAACAGTCTGCGCAGGAGCGAGGTCCTGCTGCCCGGCCTGCGTGGCTCCGTCCCTCTCCGCCTGCAGCTGCGCAGCCAGCTCGTCACCATGGATACCGCCAGCACTGCTGCCCACTTCTATCCCCAACTCCTCCCCCTGCACCAGTGTGAGGAGGCAGTGTGTGCGGTGCGCTGCTCCAGGCTCagtctggaggaggagggggtgtaTCTGGCCCATGATGCCCTGGGCCTGGTGCTGTGGGTGGGCCACCATGCCCCCCCATCGTTCCTCTCCTGCCTGTTCAACACCCCCTCCTTTCCCGTGCTGCCCAGCGGAGAGTGCTGTCTGCCGGTGCTGGACAATGCCGTGTCTCAGCGAGTGAGGGGCCTCATCGACACCCTGCGCCGCCGCTCCGCGCACTCCCTCAGGTTGCAGGTGGTGAAGCAGGGGCAGGGCAGTGAGGAGGCTCTGCAGCGCCTCCTGGTGGAAGACAAGAGCCCTAACGGAGGGGCATCCTACCCCGACTTCCTGTACCACGTCCACGTCAGCTCTCTAAAGCTGCTCCCTTGAGCACAACGGTCTGTGTCCATCTGTCCCCAGTCTTGGTCTATGTCCCTGTCTCACTCTAGACTGTCTCTGTCCATCCACAaccttgtctctctcttcccacagtctgtctgtctgtccagtgCATGCctggccctctctctctcagtaatGCATCTTGTTCAAACTCTCAggcacttctctctctctttccaagGCAATAAATACCATAACTTCAGACAGACCTGAgcctctgtgtcagtgtgtatgtgtgtgagagagagtgtttgtgagagagagagtctgcaggggtgtgcgtgtgtgtgggtataTCTTTGCAAGTTCACATCTTTATACACGGTGTGCTCAGCTGGACAACAGAGgtgcacttgtgtgtgtgtacacacacacacacagataacacaaaaccaaaatgacGATCTACATTCTGCAAATTTGGAACGGTTTTATTACCccttctctgcctctccccaCACCAGCAAAGAGCCCAGGTAGTGCTCTGTACATCGCGTCACACCAGCCTCCTGCAGGGCAACATGCTCTGTCACGCTAGCCTGGCTGTGTGGCCCCCATCCCTATGCTGAAGTGGGAGCTCTATGTCTGCAGGTGTGCTGAGCCAGTCAGTGCTGTACAGGTAtagtctttttttccctctctcttgccATGCATCAGTGACCCTGTGCCCCTCACCCCATGAAAGAGGTGCAGGCTGCAGGAAAGCACTTTAGTTCACAACAcagtggctctccaggactagCGTTAGCCCGCGCTGAACTATCGCCCCCAGCCGAATACCCCcttcccaccccaccccacggGCCGCCGCAGCTCAGAGGTACTTGTACACGACTGGCTGCTCCAGCGTCTGCACCTCCATCTTGACGGGACACTTGTAGAAGTGCGAGAGCAGCGCCTCGGTGTAGCCCACCAGGAAGTAGAACTTCTGGGGCGGCAGCTTCTGCAGCATGAGGGCGCAGATGAGCAGCAGGTTGCCGCGGCGCTTGATGATGAGCTCGTTGGCCAGGCAGCCGTGGAACGTGCCGAAGATGAAGCGCCGCACGAACACGTCCTCCACGACCCGGTCCGCCGCGCCCTCCTCCCCGCACAGGTTACTGGTGTGCTGGGAGAGCCAGCCCTTCCGGTGGCCGATGTCATGGGGGCGCAGGGCATGCTCGTATGTCACCGGCCTATCGCCCTTCCCCACTCGCACCCGCGCAGCACGGttctgcacaGCAAACCGCGCTGGTCTGGATTGCTCGTGTACCGGGACGGGACAACACTATACATCCGAGTCGGGTCACCgggccCCGAGCAAAGACAGCTTCACCGCCGGCTGGAGAGCGGCGTCTGTGCGCAGGGGCGTCCATCACACGGGCCGGGCCATGGCCTCCTCGGGGGAGATGACGGAGCTGTACGACAACGCTCTGCTCGGGATACTGCAGCACGTCGGAAACATACAGCAGTTTCTGCAGGTCTACTTCGGCTTCCTCTACCGCAAGACGGACTTCTACAGACTGCTGCAGAGCCCCGAGGACCGCATGGGCTTCCCCCCGGGGGTGGCCGAGAAGATGGTCCTGAAGGTAGGTAAACCCGCCGAGATATGATCCGGACTGGTTTTGCCCGCGCTGCGTGTCCGAGCGCTCCCGCTGTGTTTTGTCTACCGCTTTCGGCCGGGTGGAAACGAGAGCCACAGTAACTATTTATACCCCGTGATCCCTCCGCAATGCCAGGTACGCGGTTTATAAACGCACATCCGAGCCGGAGAAAGCAGAGCCCCGGCAGGAGATTATTTTACCAAATGCTTGTGATGCATCTATAATTAAACCAGAAATGCGCTTCGCTGGACACGCCGTCATTTAGTTTCATTTCACGTGCATGCACTTGAACAATGAATGCAAAGTTATTTTTTGCGACTCCTGAATTGTAGGACTAATATAATTACACGtcatagaaatataaaattgagGGCAGCAAGCAGTCATAATTGCCAGACCCAAAGTGCACGACCAAGAACTGaagtctattttaaatgcatctgttaTCTTGGTAAAACTTAATTAATGAAGATCGTTTGAGAGCAGCTGAGGAAGTTGTGACGCGTCACCCTTTGGC

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82516 lncRNA upstream 131340 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 132148 34749127 ~ 34749343 (+) True G65996
TU82515 lncRNA upstream 133377 34746893 ~ 34748114 (+) True G65994
TU82489 lncRNA upstream 149112 34676911 ~ 34732379 (+) True G65978
TU82472 lncRNA upstream 354416 34526867 ~ 34527075 (+) True G65962
TU82612 lncRNA downstream 132010 35025003 ~ 35026229 (+) True G66072
TU82704 lncRNA downstream 255221 35148214 ~ 35149418 (+) True AMCG00020855
TU82709 lncRNA downstream 274075 35167068 ~ 35170275 (+) True G66151
TU82810 lncRNA downstream 540275 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 659910 35552903 ~ 35553230 (+) True G66258
AMCG00020840 mRNA upstream 1686 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020835 mRNA upstream 16129 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020826 mRNA upstream 379289 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020827 mRNA upstream 388101 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020819 mRNA upstream 405846 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020844 mRNA downstream 26825 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020843 mRNA downstream 42022 34935015 ~ 34936792 (+) True AMCG00020843
AMCG00020841 mRNA downstream 71629 34964622 ~ 34966485 (+) True AMCG00020841
AMCG00020846 mRNA downstream 84931 34977924 ~ 35005498 (+) True AMCG00020846
AMCG00020847 mRNA downstream 163151 35056144 ~ 35076420 (+) True AMCG00020847
TU82530 other upstream 94017 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 469871 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 822026 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 921809 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1773065 33107873 ~ 33108426 (+) True G65705
TU82596 other downstream 74851 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 270820 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 854232 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 974400 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 1361706 36254699 ~ 36256511 (+) True G66506

Expression Profile