RNA id: TU82915


Basic Information

Item Value
RNA id TU82915
length 2045
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00020874
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35747156 ~ 35750446 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGATGTAGGGGAGGAACGGGGCTGTTAGTGGAAACGGCACTTATTTGTGTAttggttgtttatttgattgtttacCACTTCACATCTGAAATGGAGGTCCTGCGGGAGGAGGATGCGTCAGTGGGCGCCGACTTCGATcagcagaataaatacaaacccGGAGGCCGTCTGGACATGAGCCACGGCTTCCTGCACCATATTCGCAGAAACCAGATTGCCAGGGACGACTATGATAAGGAGGTGAAGCAGGCGAAGGAGAGGCAGAAGCGGCGGCACACGAACACGCCGAGCCGCCCGCGCCGCCCCGACATCCAGGTGTACCACCCGCGCCGCAGGAGTAAGGACTGGGCCTGAGACCGCAGGCAGCCACCCTCCAAACACACAGGCCGACGCTGGCACCCTCCCTCAGACTTAGCCCCGTCTTAGAAAGGGTTTCACTCCTTtcacatgcatttcaaaatgcatcATGAGTAGCAGGAACGCTACGGAGTCGCCTGGGGGATGTAATGAGCAATACGATTATATTTTGTACTACTGGACAAGGCATCCTGAATTTAGAGAGCAGAATGTGGGTAAAAGGTTTGGGGTTTAaaaggtatattttaaaatacaaacaaatacacaaacaacattaacaaataaatctGTAGGTTTTGAGGGGGTTAAATGGAAGCACTGTTAatcaggggtgtgtgtgtgtctgtgtgcgtctcctCCAGGTGGTTCTGAGCAGTGTGCGGGGATGGAGAACGAGGAGTCGAATGAGAGCAGCTCTGGCACAGAACCAGAGGCCCAGGGCACGGAGCTGTTCTGCCTAGAGTACGAGGCCGACGGTGGGCGGGTCTCCTCTTTCATCGTCTACAAGGAGGAGGAGCCAGAGCAGGTAGTGGCGAGGGTGGCGGCAGGCAACGCCCTGGACCCAGCCATGCGGGCGGCGCTGCGGGCCAGATTGCGGGAGGAGATGGACAAGCGGCGAGACAAGCGCTGAGAGGGCGTGCTGCTGCCCAGATGATCCACCGCAGCcccagaggagagggagagggagagggagagggagggcaaGAGGGTGCCAACCTCCTTTTTGAACTCCAGAGCCATCAAGTCTTACAGCTCCCTTCTTTGAACCATCTGACCACAATAATTCAACTGACTCAAACAAAACCCCCGCAACTGATTTGCAGAACCGACACGAGGGAAATACTGATCAtacccaaaaaaataaatcatgatcCTCAGCTCACAAAGGCAGGGCTGGACTTTGCCACTAGGTGACGGGGATGCTGATGTTGGCTCTGTCTCCTCCACGGATTGACAGACAACCCACCCCCTCCCAGCGGACCCTAAGAGCATCAGTGCTGGTTGACCAGGCCTGCGGGATGCTGGGACAGGAAGACTATGCCAGCTGTAGGTCTTGGAAGACTGGACTTCTGTTGGCAAGACTAAAAAATTAGGCCAAATCTCCTGCCATGAGCTGGCAGAGATCCACAGCCTCCAGAGTCTAaaggctgcatcacagacctgTCATGACTACAAGCCAGTCCAGTGCACTCATTCCAAGCTCCATCACTGTTTGGTATTTTCCGATTTGTTTCATTTTACGGCAGTCAGTGAATGATCTGCCCCCCCACCATTGGTTCTTTTCCCCACCCCCATTTTAGTCTGTCTTGAGCCTCTCGATTTACACAGACGATTAGAAAAGTAACACACGAAAGAATTCGAATGGctatgaattaatatttttctgCAGGTGTGTTTTGGGAGAAATTTGCAGCTTCAGAGTGGCCAGGGAGGCTCCTGTTGTTTAAAGGTTCTGTACAGATACGATAATAACTTGATTTCGTTATAATGCTGTAAAGCCGAGTAATTACAGCTGCAGACCACCCTTGTTCCCATCAGCTCAATCTGAGCTTAGAGAGAAAGTGGAGATGTTGGTGGAGATGAACTGAGACTGAGACTGTGAGAATGTGCTTCTGAGCTAAAAATAGGAAggtgtattgtttgtttttttgttgttgttgtagtaataaaccaatgcaaacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82891 lncRNA upstream 30976 35716045 ~ 35716249 (+) True G66290
TU82838 lncRNA upstream 193995 35552903 ~ 35553230 (+) True G66258
TU82810 lncRNA upstream 313667 35433268 ~ 35433558 (+) True G66231
TU82709 lncRNA upstream 576950 35167068 ~ 35170275 (+) True G66151
TU82704 lncRNA upstream 597807 35148214 ~ 35149418 (+) True AMCG00020855
TU82924 lncRNA downstream 7754 35758108 ~ 35761032 (+) True G66319
TU82931 lncRNA downstream 17887 35768241 ~ 35768571 (+) True G66325
TU82953 lncRNA downstream 48356 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA downstream 63389 35813743 ~ 35817779 (+) True G66348
TU83019 lncRNA downstream 254265 36004619 ~ 36074421 (+) True G66395
AMCG00020875 mRNA upstream 10236 35727752 ~ 35736989 (+) True AMCG00020875
AMCG00020872 mRNA upstream 330380 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020869 mRNA upstream 334430 35405143 ~ 35412795 (+) True AMCG00020869
AMCG00020868 mRNA upstream 345701 35376270 ~ 35401524 (+) True AMCG00020868
AMCG00020863 mRNA upstream 390709 35354706 ~ 35356516 (+) True AMCG00020863
AMCG00020883 mRNA downstream 69802 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020884 mRNA downstream 101285 35851639 ~ 35859695 (+) True AMCG00020884
AMCG00020891 mRNA downstream 158998 35909352 ~ 35926494 (+) True AMCG00020891
AMCG00020893 mRNA downstream 180268 35930622 ~ 35937150 (+) True AMCG00020893
AMCG00020892 mRNA downstream 187088 35937442 ~ 35950175 (+) True AMCG00020892
TU82706 other upstream 582240 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 738903 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 959751 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 1335605 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1687760 34059111 ~ 34059465 (+) True G65830
TU82978 other downstream 117039 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 504345 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1164461 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4570759 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 5301118 41051472 ~ 41052558 (+) True AMCG00021005

Expression Profile