RNA id: TU74500



Basic Information


Item Value
RNA id TU74500
length 1117
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G59578
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2715528 ~ 2716915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCGGGCCCTTTGAGTACTGCTCAGAGCGATGATGTTATGGTATAGCAGGCCTACCTGGATTGTGATACTCGAACACCTTGAAGAGGGAGGAGCTGACCATGCCGGTGCGGAACAGCTCTCGAACCCTGAACCCCACGCACAGGGGCTCCTCGGAGGGGATCTGGAAGGAAAGGGCTGTGGGTGTAGAcagagcaaacacacacacactctctccctctccctctccctccctctctctctgctaaatGCAGGAGTCACTGGTGCTTTCAGAGCACTTTGTAAAAACATAACTGTGACAGAAACGAGGCTCTGTGGAGTCAACAGCTGCTGCTACAGTCAGTGACAATAGTGTCAAAGGTTACATCTCATACAGAAGAGGTGGCAAAAAGATGTTGAGTCATTTGTGTGTATACAGGAACAGGGTTTATCCACCTTGTGCAGGACTGGGGGGCAGGCCGGGGGCTGGGAGTTCAGGGCAGTTTGGCTGTGACGCCAGCAAGGAGAAATACTTACAGAGTCCACTTGGATGGTGACCCGGTCATCCAGGATCTTGTACTCAGAGATGAGGTAATCCACCCCATTGGCCAGCGTCCAAGTCTTCCTGGATGGGCACCAGACCAGTGGGCAGGTAGATCTCCATCACAGCGTGACCAGACTCGTAGTATACCTCGTTCTCCCGAGGCTTGTACCTGCACAACAGACACAAGCACGCATCCACACTGCAGGGCTCTGTGCGATAGTTTCTACCAGATCACTGCCTCCGTTCTGGCGCAAACGTTTTGTGTCGACCGCGCATCGAAGCAACCCAACCGATGAGTTGGCCGGACACCCACGGAGCGTTCTCCTCCGAGGATGAGCAGCCAAAGTGTAATTCTTAGAACAAAGACCCCCATCGGAGACATaagtgtgcatgagtgtgttcAGAgggattgtgtttttgtgagaTATCTGAATGGCGTTATGTGACAAAGGTAGAACAGTGTATGTTTGAACTCCGCCTGGACACTTGTGatgattcagttttttttgttaagttgTTTCCTTTCCTGACATGATGATAATAAGCAAGACCTCCTTCATAATAACCATGCATTTACTCACTTCGCACAGGCTTTA

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74467 lncRNA upstream 81398 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA upstream 127459 2583694 ~ 2588069 (+) False G59557
TU74348 lncRNA upstream 534459 2180603 ~ 2181069 (+) True G59467
TU74341 lncRNA upstream 548088 2164521 ~ 2167440 (+) True G59460
TU74340 lncRNA upstream 551924 2161935 ~ 2163604 (+) True G59459
TU74548 lncRNA downstream 70995 2787910 ~ 2788239 (+) True G59625
TU74563 lncRNA downstream 108676 2825591 ~ 2826637 (+) True G59638
TU74574 lncRNA downstream 166799 2883714 ~ 2885416 (+) True G59646
TU74584 lncRNA downstream 245593 2962508 ~ 2969578 (+) False AMCG00019920
TU74654 lncRNA downstream 314963 3031878 ~ 3034341 (+) True G59700
AMCG00019907 mRNA upstream 45515 2666705 ~ 2670013 (+) True AMCG00019907
AMCG00019904 mRNA upstream 52368 2658045 ~ 2663160 (+) True AMCG00019904
AMCG00019905 mRNA upstream 59495 2650937 ~ 2656033 (+) True AMCG00019905
AMCG00019906 mRNA upstream 79283 2632245 ~ 2636245 (+) True AMCG00019906
AMCG00019908 mRNA upstream 83863 2620970 ~ 2631665 (+) True AMCG00019908
AMCG00019910 mRNA downstream 25786 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019916 mRNA downstream 73858 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019917 mRNA downstream 135294 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019915 mRNA downstream 152790 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019921 mRNA downstream 193329 2910244 ~ 2918881 (+) True AMCG00019921
TU74243 other upstream 1637465 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2269998 441598 ~ 445530 (+) True G59305
TU74774 other downstream 524524 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 2106898 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2638857 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2641549 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3465797 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile