RNA id: TU74548



Basic Information


Item Value
RNA id TU74548
length 330
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G59625
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2787910 ~ 2788239 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GtttaacacacacagcaccctGTTTAACACCCAGCAccccatcagtgctcagactgtgcGCAAtcggctgagagaggctggactgagggcttgtaggcctgttgtacgGCAGGTCCTtacagacatcaccggcaacaacgtggcctatgggcacaaacccacctgcgctggacgtgatttcctgcaggACAGGAATGTCGGtgtctgccatggccagcgaagagccggATCTCAaccccattgagcacgtctggggcctgttggatcggagggggagggcgagggccattcccccagaaatgtgcgggaacttgcaagtgccggtggaag

Function


GO: NA

KEGG:

id description
ko04214 Apoptosis - fly

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74500 lncRNA upstream 70995 2715528 ~ 2716915 (+) True G59578
TU74467 lncRNA upstream 153780 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA upstream 199841 2583694 ~ 2588069 (+) False G59557
TU74348 lncRNA upstream 606841 2180603 ~ 2181069 (+) True G59467
TU74341 lncRNA upstream 620470 2164521 ~ 2167440 (+) True G59460
TU74563 lncRNA downstream 37352 2825591 ~ 2826637 (+) True G59638
TU74574 lncRNA downstream 95475 2883714 ~ 2885416 (+) True G59646
TU74584 lncRNA downstream 174269 2962508 ~ 2969578 (+) False AMCG00019920
TU74654 lncRNA downstream 243639 3031878 ~ 3034341 (+) True G59700
TU74670 lncRNA downstream 319561 3107800 ~ 3109882 (+) True G59714
AMCG00019910 mRNA upstream 19847 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019907 mRNA upstream 117897 2666705 ~ 2670013 (+) True AMCG00019907
AMCG00019904 mRNA upstream 124750 2658045 ~ 2663160 (+) True AMCG00019904
AMCG00019905 mRNA upstream 131877 2650937 ~ 2656033 (+) True AMCG00019905
AMCG00019906 mRNA upstream 151665 2632245 ~ 2636245 (+) True AMCG00019906
AMCG00019916 mRNA downstream 2534 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019917 mRNA downstream 63970 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019915 mRNA downstream 81466 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019921 mRNA downstream 122005 2910244 ~ 2918881 (+) True AMCG00019921
AMCG00019920 mRNA downstream 174272 2962511 ~ 2969595 (+) True AMCG00019920
TU74243 other upstream 1709847 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2342380 441598 ~ 445530 (+) True G59305
TU74774 other downstream 453200 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 2035574 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2567533 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2570225 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3394473 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile