RNA id: TU74563



Basic Information


Item Value
RNA id TU74563
length 969
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G59638
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2825591 ~ 2826637 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCGTTcaaaaagcatgtttatttCCAGTATGGACGCAGAAgaaagctgtattttaaataccatAAAAAGAGCACTTACATAAAGATGTTGTACCACAAACCGAAGACACttccattaaaaaacataataaaaagaagGAAGCACTGAACTCAGACTGTCAGTGAACATTTTCTAACTTAATTCTCTAActtgatatttatttacaatattacagagccatttgttttgctgtataaatatatatttttaccgTATCATATTGTTCCAAACACACAGGACCACCaatgcatttttacaattaaaaaaatatttttgaactCAAGAGGAGCTGAAACAAACTCGAGttgcatttgcattaaaaagcaGCTTCTGGGCGTCTCTTGCAGGGGCTTAAGTGTGGAAGTTGCCGGCCCTTCTGGGAGCCCATAGGACGACATCGGTGCAAGATGGGCCTCGTCACCAATCGACAATTAACACCTGCCGCTTCCTTACTAGTCGTTGTGTGAAAAGGAGCTGAAAATATGCCGTGGGGATTGTGTGGGAGTGCACTCTGCTCTCCCACGACAGACACCACTGCAGCAAAGCATCAACGCGTCTCGCCTAAAACCACAGaagcacagagaaacacaccGACACTCGAGAGGGAATATGAAacttacatttaagaaaaatatacagctctggaAAACGGCGGGTGCCCAGATTAGAAACATGCGCAGCTAGAGGAGCCCCGTTTTCACATGCTGAATTCAGGATCAGACCATTTCACGGGCAGGCCGTCATCCTCCCCCAACAGACTGTCTTCTGGCAGCTCATTTAAAGTGCCGTCCGCCAAGAAGTCCTCGTGGAAAATGTCCGACAACAGGTAGGTATCCAGATTCTGGACAGCAGGGCCGTCTGAACAGGGTACCATCCGCGAAACTGTCGCTTTGAGGACGGGGAGAGTTTTGTAGTAGAGATGGTCCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74548 lncRNA upstream 37352 2787910 ~ 2788239 (+) True G59625
TU74500 lncRNA upstream 108676 2715528 ~ 2716915 (+) True G59578
TU74467 lncRNA upstream 191461 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA upstream 237522 2583694 ~ 2588069 (+) False G59557
TU74348 lncRNA upstream 644522 2180603 ~ 2181069 (+) True G59467
TU74574 lncRNA downstream 57077 2883714 ~ 2885416 (+) True G59646
TU74584 lncRNA downstream 135871 2962508 ~ 2969578 (+) False AMCG00019920
TU74654 lncRNA downstream 205241 3031878 ~ 3034341 (+) True G59700
TU74670 lncRNA downstream 281163 3107800 ~ 3109882 (+) True G59714
TU74671 lncRNA downstream 289881 3116518 ~ 3116819 (+) True G59715
AMCG00019916 mRNA upstream 15590 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019910 mRNA upstream 57528 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019907 mRNA upstream 155578 2666705 ~ 2670013 (+) True AMCG00019907
AMCG00019904 mRNA upstream 162431 2658045 ~ 2663160 (+) True AMCG00019904
AMCG00019905 mRNA upstream 169558 2650937 ~ 2656033 (+) True AMCG00019905
AMCG00019917 mRNA downstream 25572 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019915 mRNA downstream 43068 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019921 mRNA downstream 83607 2910244 ~ 2918881 (+) True AMCG00019921
AMCG00019920 mRNA downstream 135874 2962511 ~ 2969595 (+) True AMCG00019920
AMCG00019926 mRNA downstream 169227 2995864 ~ 3004905 (+) True AMCG00019926
TU74243 other upstream 1747528 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2380061 441598 ~ 445530 (+) True G59305
TU74774 other downstream 414802 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1997176 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2529135 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2531827 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3356075 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile