RNA id: TU74574


Basic Information

Item Value
RNA id TU74574
length 1617
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G59646
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2883714 ~ 2885416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTTTCAACTCATTCTCGCTGCTGCTCAAACTCTgccattttgtttcagtgcGCTTCGCAGAATTAATAGACAGCAAATAGCGACAgtccacaaaaacaacaaaaacaaaaaattctACTTCCCCAGGTgaagcaacatttattttctctacaCAGCGCTCGTCAGTCAGTAAAAAGGCAATCATATTTATGCATAGTGAATTGGGATTTACAAATGCCGCGTTACAGGGAGGGTTTGGGAAAACAGCAGTAGGGAAAAGACCAGGAAAATGAATAAACCTGCACTTCTAAATGCTAACTACGGGTCGACTTGGCACTCCATATTTCACAGCGAAGGGTGAAATGTCATAAAGCTAATTAAACGAACAGAAACGCTGGGCGCACAGAACAATTCAGTCTGGAGTGAAGTCTCTGTGGCCGAGAGGAAAAGCTAGTGTTTTAGACGGTCCATTGGACGGAACAATATtaacactcaaacacacacacactcacactcacactcacacacacacacacacacacacacacactctcacacacagacacacacactctcacatacactctcacacacacacacacacacacactctcacacacagacacacactctcacacacacacacacatacacactcacacacacactcaaacacacacacactctcacacacacacacttgtttcTTGCCTGTGTTTAAATCTGGTAACTGTCTCTGGACGTTCAGGATTAGAAGGTTACAGAAGTTATCCGTGaacttgtcatttaaaaaaaaaaattggggaTTTACTAGAAACGCCAAGCAGATGCCATATCTGCAAAACTGCGACAACCAAACAACTCTTGCGAGTGATAATTACTCCTGGCTTATTTTAGCAATTAAAAATCCTGCCACtccataaatacattatttattttggcagtCTGTGGCTACTGCTCTTCAATTATCATTCCCGCCGGCTCGTTAACACAAACACTTAAgcgagaaaataataaagaaagaaaaagacagacaaacaaaaacacgtacatatttttttaactactaGTTGGTGACAACCGAGTGCACGCACGATACACGCACAGAGTAGTcgtcattataaaaaaaaatgtttgtcaaAAACTTAATTAATCACTGTCGTGGCCTTCGCAGCGGCAGCCCGCTGATAAAACTCCACCATGGGCAAAAAACATGCGTTGAACGACGCCCAGCGCCGCGGCGAGCGGGAGGCCAGCACCGTGCGGGTCTCGGTACAGCGGCACGGGGGGAGACGGGCCGCTGATGGACGCCTAGTCCTGTCTGGAGTATAAATCAACTCCACGCCGTCTGCATCCTGAGCTTCACGTATAAGACGATGGGTGAGAGTGCATTTACTGCATGAGGTTGACAGAGGTGACAAGAGCGTCTGGGAACCGAGGGCGCCCGGCCACCGCAGCCACCAGATCCCCGGGCTGCGTTCAACTCTCCAGCACCGATCAGTGCCCCGCCCTCGTTACTGCATCCGCTTCTTGGCTTTCTGGTGGCCCGCTTTCTTGCGCTTCTTGGCCTTCCTGAGGACCTCCCCCTCCTGACCGCTGGCGTACTCCGAGCGCAGCAGCCCGGCCTCCCGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74563 lncRNA upstream 57077 2825591 ~ 2826637 (+) True G59638
TU74548 lncRNA upstream 95475 2787910 ~ 2788239 (+) True G59625
TU74500 lncRNA upstream 166799 2715528 ~ 2716915 (+) True G59578
TU74467 lncRNA upstream 249584 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA upstream 295645 2583694 ~ 2588069 (+) False G59557
TU74584 lncRNA downstream 77092 2962508 ~ 2969578 (+) False AMCG00019920
TU74654 lncRNA downstream 146462 3031878 ~ 3034341 (+) True G59700
TU74670 lncRNA downstream 222384 3107800 ~ 3109882 (+) True G59714
TU74671 lncRNA downstream 231102 3116518 ~ 3116819 (+) True G59715
TU74672 lncRNA downstream 231798 3117214 ~ 3117452 (+) True G59716
AMCG00019915 mRNA upstream 6896 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019917 mRNA upstream 16750 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019916 mRNA upstream 73713 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019910 mRNA upstream 115651 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019907 mRNA upstream 213701 2666705 ~ 2670013 (+) True AMCG00019907
AMCG00019921 mRNA downstream 24828 2910244 ~ 2918881 (+) True AMCG00019921
AMCG00019920 mRNA downstream 77095 2962511 ~ 2969595 (+) True AMCG00019920
AMCG00019926 mRNA downstream 110448 2995864 ~ 3004905 (+) True AMCG00019926
AMCG00019925 mRNA downstream 130818 3016234 ~ 3020777 (+) True AMCG00019925
AMCG00019924 mRNA downstream 138973 3024389 ~ 3031475 (+) True AMCG00019924
TU74243 other upstream 1805651 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2438184 441598 ~ 445530 (+) True G59305
TU74774 other downstream 356023 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1938397 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2470356 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2473048 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3297296 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile