RNA id: TU74654


Basic Information

Item Value
RNA id TU74654
length 1411
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G59700
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3031878 ~ 3034341 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATACCACACTGTAGAGTTTTATTAGATGGGTGTCTCCAACATAATAAACAGTGCTCTCAGGGTAGGGACAAGCTGTTGTTCCATTATACAAAAAGACACAACAAGATCGACAAGGAGAAACAAAAGCTAGGGACAAGAAACCGGGAACTCACAATTACTGTATTATAAACgtcagatatatttatatattaatttataatttcataagaaaagaaaatgtacaatgctACACATGACACTAtgtacaaatcaataaataaagctggGACGAGAAAatccaaaaaaactaaaagtaaaagCAAGTTACAAAGGACATttcatcatctttttttttttcttgtacaaaaaaaaaatacaaaagaaaaaaacaaccaaaacactGCAATTCGTTAGAAAAGTTTGttatttacttcatttttttcttttcaagtaagagaaaaaaaatggcacCAGGTTTTGGACAATATTCGCAAAAGGGTCACAGGTTCTGTGGGCGGCAGTCTCTGGTACACGTCGCGGGCAGGGGCTGTTCTGCGTGTGTTCGGGGGTCCTTCCCTCGATCTTTGGTGGAGATGATTAAAAACAGTGAGTGGTTCTGCAACTGAAGACCAGAATCTCCTTTGACGGAGACTCGGCGATTACGGAAGTCTGCAGAAAGCCGGTATTTTTAGAGTCACTTGAATTTGATGGCCGTTCAGAGCTGAACGGCGAGGCGAAGGAATCCTGTTAAAACACCCATTGTGCGGACAATTCCAGTTTAATAGGCATGGAGATGAAATCTATTAGACACGAATAAGGGACTAATGAGATCTGAGCCAGCGCCGTCTTCCTCTCCTCCGTCTGCAGTCCCTGTGCAACTCTGCTGAGGTCCAATGCAAAGGTCCTCAAAAGAGGCATCTTCATTGCCTGTTTCCATCGGCTCAGTGTTTGTTTGGGTTCACCGTCGGCGTGGGAGTGGATTCTGGCAGCACAGGGTTACTGCCGATGCCGTCAGCGGAGAAGAGCGAACTGGTACGGGAGGGATGTCAGTGGTGTGAATAAACAGTTGACGGGAAGAGAAGACCCAGGTCAAGATGTTTGGTCTGGCCGCCTTCACTTGAGGCGGGACGGGGACGCGTGTCCGCAAGGTCAGAGGCGCCCCCCTCACCAGAGCTGTCCTCCCTCGCCTTCCTGCTGCGGTTCTAGAGAGACCATCAGTTGTTTTTACTCCCGAAAAAGACAATTGTCCCGGCTGTCCGGCAGTGGAGTCCTCTGCGAGCGTCCTGGGTGCAGTACAGGGGCGGTGGACGTGCCAGAACCAGGGAACCGTCAGCCCCTGGACGAGAGACGGGCCAGCGGCATTGTGGGTAGTCACATGAAACAGTGTCACGGTCTGGGCAAGCATTCCCAAATGATGTGTATATCAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74584 lncRNA upstream 62300 2962508 ~ 2969578 (+) False AMCG00019920
TU74574 lncRNA upstream 146462 2883714 ~ 2885416 (+) True G59646
TU74563 lncRNA upstream 205241 2825591 ~ 2826637 (+) True G59638
TU74548 lncRNA upstream 243639 2787910 ~ 2788239 (+) True G59625
TU74500 lncRNA upstream 314963 2715528 ~ 2716915 (+) True G59578
TU74670 lncRNA downstream 73459 3107800 ~ 3109882 (+) True G59714
TU74671 lncRNA downstream 82177 3116518 ~ 3116819 (+) True G59715
TU74672 lncRNA downstream 82873 3117214 ~ 3117452 (+) True G59716
TU74673 lncRNA downstream 83181 3117522 ~ 3117909 (+) True G59717
TU74674 lncRNA downstream 85471 3119812 ~ 3120189 (+) True G59718
AMCG00019924 mRNA upstream 403 3024389 ~ 3031475 (+) True AMCG00019924
AMCG00019925 mRNA upstream 11101 3016234 ~ 3020777 (+) True AMCG00019925
AMCG00019926 mRNA upstream 26973 2995864 ~ 3004905 (+) True AMCG00019926
AMCG00019920 mRNA upstream 62283 2962511 ~ 2969595 (+) True AMCG00019920
AMCG00019921 mRNA upstream 112997 2910244 ~ 2918881 (+) True AMCG00019921
AMCG00019930 mRNA downstream 95588 3129929 ~ 3141283 (+) True AMCG00019930
AMCG00019929 mRNA downstream 108106 3142447 ~ 3147034 (+) True AMCG00019929
AMCG00019932 mRNA downstream 114753 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019931 mRNA downstream 124256 3158597 ~ 3161191 (+) True AMCG00019931
AMCG00019935 mRNA downstream 159446 3193787 ~ 3196215 (+) True AMCG00019935
TU74243 other upstream 1953815 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2586348 441598 ~ 445530 (+) True G59305
TU74774 other downstream 207098 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1789472 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2321431 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2324123 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3148371 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile